Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1010 ATGGGGAGGGGAAGAGTGGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAGGTCACTTTTGCAAAGAGAAGAAATGGCCTTCTCAAGAAAGCCTATGAGCTCTCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCTACCCGTGGCAAGCTTTATGAGTTTTGTAGCAGCAATAGCATGCTGAAAATACTGGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTGGAAGTGAGCAAGCCTGCCAAAGAGCTCGAGAATAGCTACCGTGAGTACTTGAAGCTGAAAGGCAGATTTGAATCTCTCCAAAGGACTCAGAGAAACCTTCTTGGGGAGGACTTGGGCCCACTGAATACAAAAGAACTTGAGCAGCTCGAGCGACAACTGGACTCATCTCTCAAGCAAGTGAGGTCCACGAAGACACAATTCATGCTGGACCAGCTATCCGATCTTCAAAATAAGGAGCAAGTGTTGGTAGAAGCAAACAGAGCTCTGACTATAAAGCTGGAAGAGATTAATGCTACAAACCACTTCAGACAGTCATGGGAAGCTGGTGAACAAAGCATGCCATATGAGACACACAATGCTCACTCTCAGGGTTTCTTTCAGCCTCTGGAATGCAATCCCACGCTGCAGATGGGTCCTGAATACAGGTACAATCCAGTAGCTTCAGATCAGATGGCAACAAGTCAAGGGCAGCAAGTGAATGGCTTCATTCCAGGGTGGATGCTCTGA 741 0.4696 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSSNSMLKILERYQKCSYGAVEVSKPAKELENSYREYLKLKGRFESLQRTQRNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKTQFMLDQLSDLQNKEQVLVEANRALTIKLEEINATNHFRQSWEAGEQSMPYETHNAHSQGFFQPLECNPTLQMGPEYRYNPVASDQMATSQGQQVNGFIPGWML 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1010 246 FunFam MADS-box transcription factor 1 13 87 - -
Lele13g1010 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 185 - -
Lele13g1010 246 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Lele13g1010 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Lele13g1010 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele13g1010 246 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele13g1010 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele13g1010 246 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele13g1010 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele13g1010 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele13g1010 246 Coils Coil 124 144 - -
Lele13g1010 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele13g1010 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele13g1010 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele13g1010 246 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1010 Lele-ChrLele13 21199917 21206278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1010 1 246 MADS-box Gene Family AT5G15800 73.282 6.28e-127 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele13g1010 K-box 1.6e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1010 13 21199917 21206278 Lele15g1460 15 8540765 8546665 hybridization
Lele13g1010 13 21199917 21206278 Lele16g1486 16 8531223 8535522 hybridization