Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1008 ATGGGGAGAGGTAGGGTTCAGTTGAAGCGGATCGAGAACAGTTCGAGCCGGCACGTGACGTTCTCCAAGCGCAAAACCGGGTTGCTTAAGAAAGCCAATGAAATCTCAGTGCTCTGCGATGCTCAGGTCGCTTTGATCGTCTTCAACTACAAGGGCAAACTCACTGAGTTTAACTCTCAATCCTCCAGCATGGATAGCATTCTGGAGCGATACGAGAGATGCTCGCATTCAGAACAGCTTGCTGGAACTAACAAAGATACCCAGGGAAACTTGTCTTTGGAGTTATTCAAGCTCACTACTAGAGCTGAAGTTTTACAGAAGAACATAAGGAATTATGAAGGAGAGGACCTGGATCCTTTGAGTTTGAAGGAGCTTCAGAGTCTGGAGCACCAGCTTGAGAATGCTCTAAGGCGCATCCGAACAAAAAAGAACCAAATCATGACGGAAACCATCTCAGAGAAGCATAAAAAGGAAAAGGTATTGAAGGATCAGAACCACATGCTAGCAAAGAAGTTAAAGGAGAAAGAGATGGGGAAGTCGATGGCAAATGCCGTCGGCTGCAAAAGTAGGCCGGAAACCCTGCCCCAATATCCCTTCAACTTTCACGTTTCTCCACCGCAGTTGCTACCACCTCCACCACCTACTCTAACTCTCGGTGGAACTTGTGGAGAAGGAGGAGCACTAGCAATGGTGGAGGGGGAAGCTGAAGCTGAAGCTGGTCCCAGTAACAACATCCATAGAGTTCCAATTGCATTTCTTCCCGATGGTGGATTCCCGCCGGGTGCTGAGGTCGTCCCCCAAGGAAGATTCTGGGGCAATTCGTCTGACGGTCAATGTTATGGGTGTCGTACTCAATGCGGTGCTTGGAATCGTGTTCGTAATTCTCGTCAAGAGGGGAACTACAGGTACAGCAGGATCATGGCGAGTAATTCCAGTTCTAACACTCAGAAGAAGCTCGTTAAAATTGATATTAGTTCTGATTCTGTATGCCCATGGTGCTTTGTTGGCAAAAAGAATCTAGACAAAGCCATTGCTTCTTCCCAGGACAAATACGACTTTGAGATAAAATGGCATCCTTATCAACTCGACCCTGATGCCCCAAAAGAAGGCGTTGACAAGAGAGAGTATTACAGAAGAAAGTTCGGATCTCAATCAGAACAGATGGAAGCTCGGATGTCAGAGGTTTTTGGGAAAGTAGGCCTGGAATATAATATGTCTGGACTAACGGGAAACACTATGGACAGTCATAGGCTTATATATTTTGCTGGACAACAGGGCTCAGACAAGCAACATCGCCTTGTAGAAGAGTTGTTTCTGGGTTACTTCACCCAGGGAAAATACATTGGTGACCGTGATTTTCTTCTGGAATGTGCCAATAAGATTAACTTAGAAGGGGCTGCTGAGTTTCTTCAAGACCCCAACAATGGGCTCAAAGAGGTTAAGGATGAGCTCAATGCACCCTCTGGAAACGTGAGAGGGGTTCCATTCTATGTGATTAATGGAAGTTGCAAAATTAGCGGCGGTCAGCCCCCCGAGCTCTTCGTGAAAGCTTTTGAATATCAAGACTGCGAACTGTTTCTAGCTGAAACATTTCGAATTTATTATTCTCTTCCTCATCCCTGGATTTCATGCATTATTGAGGGCGATGTTTGTTTGATCAAATGGCATCCTTATCAACTTAACACTACTACCCCTAAAGAAGGCGTTGACAAGAGAGTATTACAGAAGAATTTGGATCTCAATCAGAACAGATGGAAGCTCGAATGTCTGAGTCATAGGCTTATATATTCTGCAGGATTGCAGGGCTCAGACAAACAACATCCTCTTGTTGAAGAATTTGGCCTTGGCTACTTCACACAAGGATATATATCGGTGACCAGACTCAGTAATTTTCTTTTGGAATGTGCTGAGAAGGTTGGCTTGGAAGGGGCAGCCGAGTTTCTTCAGGACCCCAACAATGGCCTCAAGGAGGATGAGCTCAATGGAGGAAACATTAGAGGGGTTCCATATTATGTGGTGAGTTGA 2025 0.4553 MGRGRVQLKRIENSSSRHVTFSKRKTGLLKKANEISVLCDAQVALIVFNYKGKLTEFNSQSSSMDSILERYERCSHSEQLAGTNKDTQGNLSLELFKLTTRAEVLQKNIRNYEGEDLDPLSLKELQSLEHQLENALRRIRTKKNQIMTETISEKHKKEKVLKDQNHMLAKKLKEKEMGKSMANAVGCKSRPETLPQYPFNFHVSPPQLLPPPPPTLTLGGTCGEGGALAMVEGEAEAEAGPSNNIHRVPIAFLPDGGFPPGAEVVPQGRFWGNSSDGQCYGCRTQCGAWNRVRNSRQEGNYRYSRIMASNSSSNTQKKLVKIDISSDSVCPWCFVGKKNLDKAIASSQDKYDFEIKWHPYQLDPDAPKEGVDKREYYRRKFGSQSEQMEARMSEVFGKVGLEYNMSGLTGNTMDSHRLIYFAGQQGSDKQHRLVEELFLGYFTQGKYIGDRDFLLECANKINLEGAAEFLQDPNNGLKEVKDELNAPSGNVRGVPFYVINGSCKISGGQPPELFVKAFEYQDCELFLAETFRIYYSLPHPWISCIIEGDVCLIKWHPYQLNTTTPKEGVDKRVLQKNLDLNQNRWKLECLSHRLIYSAGLQGSDKQHPLVEEFGLGYFTQGYISVTRLSNFLLECAEKVGLEGAAEFLQDPNNGLKEDELNGGNIRGVPYYVVS 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1008 674 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele13g1008 674 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele13g1008 674 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele13g1008 674 Pfam DSBA-like thioredoxin domain 321 518 IPR001853 GO:0016491
Lele13g1008 674 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Lele13g1008 674 Coils Coil 95 115 - -
Lele13g1008 674 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele13g1008 674 SUPERFAMILY Thioredoxin-like 320 520 IPR036249 -
Lele13g1008 674 Gene3D Glutaredoxin 319 520 - -
Lele13g1008 674 Gene3D Glutaredoxin 571 674 - -
Lele13g1008 674 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele13g1008 674 Coils Coil 122 145 - -
Lele13g1008 674 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele13g1008 674 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Lele13g1008 674 CDD DsbA_FrnE 322 519 - -
Lele13g1008 674 PANTHER GLUTATHIONE S-TRANSFERASE KAPPA 589 673 - -
Lele13g1008 674 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele13g1008 674 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Lele13g1008 674 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele13g1008 674 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1008 Lele-ChrLele13 21183367 21195955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1008 1 230 MADS-box Gene Family AT1G26310 47.458 3.25e-58 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele13g1008 DSBA 6.1e-36 CL0172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1008 13 21183367 21195955 Lele15g1461 15 8550629 8555084 hybridization
Lele13g1008 13 21183367 21195955 Lele16g1487 16 8538090 8544352 hybridization