Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1007 ATGGGTTCTGTTTGTTGTTGTTTGAGTGCTGATGAATTTGAAGATTATTTAAATCGAAATAGTTCTGTATATAGGAATTGTGTGTGTCTCAATTGCTGCTTACAGAACTTTTTGAATGTGTATACAGCAATATTCCGTAGAGGGGATGTGCATTCGCTTCCTTCATCTATACAGGGGGCAGCTTCTATGACTTCTACAGCATCACTTGATAATTCACTATCTGACATGTACCATTCTCCTCCAAGGCCCTTGCCGTATGATGTAGACCCCAGGCATTTCCGCCCACGTGATTTATTCATTTCAAGACATGACAAAGGTTCAAGTCATTTGAATGAAGAGTCAGAACCTCTAAGAGGTGATTTAGATGGGGATGAAGAATCTCTAAATTCAGGAGGCAAATGTAATGAATCTTCCTGTGAAGATGTATCAAAGGAATACAAATCTAAGTCCTCAGTAAGGCTCTCATCAGCAAAATGTACAACTGGAGCTGGGCTTGCTTATGCATCATCAGAGGAGGAGGATATTTGCCCAACTTGTCTTGAAGAATACACTGAAGAGAACCCAAGGATATTGACTAAGTGCAATCATCACTTTCATCTTAGTTGCATTTACGAATGGATGGAGAGAAGTGAAAACTGTCCAGTTTGTGGGAAGGTGATGGTATTCGATGAAACAACTTAA 681 0.3979 MGSVCCCLSADEFEDYLNRNSSVYRNCVCLNCCLQNFLNVYTAIFRRGDVHSLPSSIQGAASMTSTASLDNSLSDMYHSPPRPLPYDVDPRHFRPRDLFISRHDKGSSHLNEESEPLRGDLDGDEESLNSGGKCNESSCEDVSKEYKSKSSVRLSSAKCTTGAGLAYASSEEEDICPTCLEEYTEENPRILTKCNHHFHLSCIYEWMERSENCPVCGKVMVFDETT 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1007 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 226 IPR013083 -
Lele13g1007 226 ProSiteProfiles Zinc finger RING-type profile. 176 216 IPR001841 -
Lele13g1007 226 MobiDBLite consensus disorder prediction 104 138 - -
Lele13g1007 226 SMART ring_2 176 216 IPR001841 -
Lele13g1007 226 SUPERFAMILY RING/U-box 171 223 - -
Lele13g1007 226 Pfam RING-H2 zinc finger domain 170 216 IPR024766 GO:0008270
Lele13g1007 226 MobiDBLite consensus disorder prediction 104 129 - -
Lele13g1007 226 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 60 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1007 Lele-ChrLele13 21179888 21182332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1007 1 224 C3H Transcription Factor Family AT5G38895 57.778 6.71e-93 274