Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1003 ATGCATCTCAGGCGCTTTCCTCCATATTTTGGCATGAGAGTGTACCTCTCTAGCACCAGTCCTCTGCAAGATGATTTCATTGTTTATATCAAGAGAGGTCAAACAATGGTTCGCCAAGCTACTTTAGTTATCATTGGTGTCACAGTTGGTTCGGCCTTTGGAATTTTTATCGCTTCCCTTATATTTTTTGGGATAAGGTGGTATAAGAAGCATGCTTGTCTTACACATCCTGCAAAAGAGAGTAGTTTAACGACTCTACCAATTCGCACAAATGGATTAGGAACAAGCACTGACTTTAGTGTCTCTCTTAAAAGTTCCAAATCCAATTCGATGTCAGAAAATCTGCAAAGAAACTCCAATTTCTCTTGGTGGAGTCATCAAAACAAAGATCGATTTTCTCCGACACCTGGCATTTCAAAGTACTCATACAAAGAAATCCATAAGGCCACTCAGAATTTCACTACTATTTTGGGACAAGGATCATTTGGCACAGTTTATAAAGCCACAATGCCTACAGGAGAGGTGGTAGCTGTGAAGGTGCTTGACTCTAATTCTAAACAAGGGGAGAAAGAATTCCAAACAGAGGTGCTTTTGCTGGGAAGATTACATCATCGGAATCTTGTGAATTTAGTAGGATATTGTGTAGATAAAGGACAACGTATTCTGGTTTATGAGTTCATGAGCAATGGAAGTTTGTCAAACCTTTTATACAGTGAAGTAAAGGCTTTGAGTTGGAACGAAAGGCTTCAAATTGTTATTGATATTTCACATGGAATTGAATATCTTCATGAAGGAGCAGTCCCACCTGTTATACATCGTGATTTGAAGTCTGCCAATATATTGTTAGATCATTCAATGAGAGCTAAGGTTGCTGATTTTGGGTTGTCAAAGGAAGAGGTCTTTGATGGCCGGAATTCAGGCCTTAAAGGTACATACGGCTACATGGACCCAGCATACATTTCCACAAACAAGTTCACAATGAAGAGTGACATCTACAGTTTTGGTATCATCATTTTTGAGCTCATTACAGCCATTCACCCACATCAAAATTTGATGGAATATATTAACCTTGCTGCAATGGATCATGATGGAGTAGATGAGATACTTGACAAACAACTTGTAGGAAAATGCAACCTTGAAGAAGTAAGGCAGCTTGCTAAAATTGCTTACAAATGTTTGCACAGATCTCCTCGGAAACGCCCCTCAATTTGTGAGGTTTCACAGGGCATATTGAGAATAAAAGAAAGGCGCCTTGTGAAAGAAGATATCTTGTCATTTGCAGGCCGTAACTTCTCCAGAGCTTTGAGTCTAATAAAGGATCAACAAGTTGAATTAAATAGGATAACCACCATGAACCACAGAGAAACTGGATGA 1374 0.3923 MHLRRFPPYFGMRVYLSSTSPLQDDFIVYIKRGQTMVRQATLVIIGVTVGSAFGIFIASLIFFGIRWYKKHACLTHPAKESSLTTLPIRTNGLGTSTDFSVSLKSSKSNSMSENLQRNSNFSWWSHQNKDRFSPTPGISKYSYKEIHKATQNFTTILGQGSFGTVYKATMPTGEVVAVKVLDSNSKQGEKEFQTEVLLLGRLHHRNLVNLVGYCVDKGQRILVYEFMSNGSLSNLLYSEVKALSWNERLQIVIDISHGIEYLHEGAVPPVIHRDLKSANILLDHSMRAKVADFGLSKEEVFDGRNSGLKGTYGYMDPAYISTNKFTMKSDIYSFGIIIFELITAIHPHQNLMEYINLAAMDHDGVDEILDKQLVGKCNLEEVRQLAKIAYKCLHRSPRKRPSICEVSQGILRIKERRLVKEDILSFAGRNFSRALSLIKDQQVELNRITTMNHRETG 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1003 457 CDD STKc_IRAK 157 413 - -
Lele13g1003 457 SMART serkin_6 151 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g1003 457 Pfam Protein tyrosine and serine/threonine kinase 153 407 IPR001245 GO:0004672|GO:0006468
Lele13g1003 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672|GO:0006468
Lele13g1003 457 SUPERFAMILY Protein kinase-like (PK-like) 121 407 IPR011009 -
Lele13g1003 457 ProSitePatterns Protein kinases ATP-binding region signature. 157 179 IPR017441 GO:0005524
Lele13g1003 457 ProSiteProfiles Protein kinase domain profile. 151 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g1003 457 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 38 415 - -
Lele13g1003 457 Gene3D Phosphorylase Kinase; domain 1 111 226 - -
Lele13g1003 457 Gene3D Transferase(Phosphotransferase) domain 1 227 426 - -
Lele13g1003 457 FunFam Leucine-rich repeat receptor-like protein kinase 126 226 - -
Lele13g1003 457 FunFam Calcium/calmodulin-regulated receptor-like kinase 2 227 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1003 Lele-ChrLele13 21161741 21165860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1003 128 406 Receptor kinase-like Gene Family AT3G19300 41.333 1.06e-70 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Lele13g1003 PK_Tyr_Ser-Thr 7.4e-51 CL0016