Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0997 ATGGTATGGAAGCTTGAATTCTTTGATTATGATAATCTTCATTTGTGCGTACGAACTTGTGATTTTTATATCGAACCTGCCGGGTTTGAGGCTTACATTATTGATATAATGTATACTGCAAGTGTTGAAAATGGGGCACGGGCAGCATCTGTTGGTGACCTTAGTACTGACTTTGATGCCGAAACGGATAAAATTGTGTTCCTTGAGGGCGAATCACCCAATGGGGAGGATATTGGGGATATCGGCATTGATAGCGCAACTCTAACAAGGCTGGAGTTGAGTTTAGCCGGTTTCTCTGAGAAAATTACCAACTTGAGCATCTTTATGATGCGTCTGGCTACTATGGATAGTGAATTTGAGGCCTTCGCGCTGGAGGAAGATCACGTGGAACTCGATTCTGTTGAGAAGGGTCTTGAGTTTGATCTTTTATCGGGGATATTGGATTCGGAGGTTGGAGAATTGGATAACTTCTTGCACACACAGCGAACTGAGATTGCTGATGCTCGACAGAGAACATCTTTGTGCAACCACTTGGGCGAAACTTATATGGCAATGAAAGCAAAATTGTGTGATTTTGAGCAGTACTTGAAGCAGTCTGAAGAGCAGTTGTCTGTAATCAAGATGCAATTGGCGAATTTTCAGAGGAATTTGTCCTCTTTTAAGACGGAAAAAACTGTTGTACAAGAAGGGTATTCTTGTATATGTTCCTTAACATCTAAGGGTCCGCTTCAGTTTCCTGAGAAATTGTTGTGGAAAAGTGACGTGGGTAAAATCATCAGAGATGATAATGAATCTTTAAATATGAAGCCAGAGATAAATATGCACACAGCTGAGCAGCAAAGAAATATCCTGAGGATGCTAGAGAAATCCTTGGCAAGGGAAATAGATCTTGAGACAAATTTGAATGACTCGCTGCAAATTGAAGAAGAGCTAAAACTAAGGATATCATCTTTAGAACAGGAGCTAGTTTATGCGGAGGAAGAAGCAACTGATGCTTGGGAAAAATGGTTTGAGGCAGATAGTGCAAATCAGATCCTGATGGGGATTTCAAGAGACTTACTTGGTCGACTCCACATTTCTCAGTTCAATCTGAATGGTTCAGCTCAGCGTGAATCTGAGCTCAGAGCTAAACTAGGTCTTGCTAATTCTGAGGACTCCACTATAAGTGAAAAGGTGAATTCGCTCGAGAAGCAGCTAAAAGAATCTGAACTTCAACTACTGGACACAAGGGCTTCTGCTGATGAATATCAGAAGCTATATAATGTTTTGTGTTCTGATGTAAGAGATATGGAAAATCTTACTGTAGAATTGAAAGAAAATGCATCCAAGGCAGAAAGTAGGGCTAACAGTGCTGAAGCTGAGTATAAATTGTTGGCAGAGAGTAATGCTAAACCCAATGAAGAGCTGGCTCTTTTGAAAGAGGGTGCTGCCGCCACTAAGAAGGTGGAATTGCTGGAGAGGCAGCTTAAAGAATCTGATCTACAGTTACAGCATGCAATAGCATCTGCTGAAGCTAGCCAGGAGAAACAAAATATGTTATATTCTACAATTGAGGATATGGAAATTGTGATTAGGGATCTTAAGTCAAATGTTTCCAAATTTGAAAGTCGGGCTGACAGTGCAGAGGAGAAACATATTGTATTATCTGAATCTAATGCTGAGTTAAATGAGGAATTAAGGTTTTTGAGGAGTAGATTGGAATGTCTGGAGGAAACTCTGCATCAAGTGGAAAAAACAAAAATGGCAACAGCGAAAGACATTGTCATGCACATAATGGATTTTAAAACTTTGGTCACTCAGTTGGCTGTTGAGAGAGAGCGACTTAATAAGCAGATATCTTCCTTAGCATTTGAAAACCAAATTTTGGTAGTGAAGCTAGAGAAGACATATAGGGGTCCTCCTCAAGACATTAATGGTTCTAACAGTGGTTCTTCTGCCAGAGAAATTAAGGAAGAAGTTTGTGAGACTCCAGTCGCTTGCCATAAGGGTTTAGTGCAGATACAAAATATGTACATCGTGTTATCTTGTGCTGAACGTAAAAGTAGTATTCTAGTACTGGTGTACCAGGAGGACATGACTGGACAAAATTTACCCTCTAAGGAGGACGAAATGAAGCCTGAGGAAGCCATGCCTGACGTTGGAACTGTGAGAGGAGCAGATACGGGAGTTTTTAGTTTCAAATCCTGCCAAGTTGGATTTCAGTCTTTTACCAATATCTGTTCAACCATGGCTAATAGCTCTCAACTTCCATCCCTGTTTTCCCTCGAAGATGAATTTGAAGAATCAGGCCCCGATGAACAGGTATCTGATCTCTCATCACCGACTGCCCACGATAACTGGTGCCCCGACTCCTCCAACCCCTTTGCAACCGTGTGCTTCGACCATTTCAGCAATCATGCAAACTGGTACTCCGATTCGGTGAGTTGCTTTGTAACAAATCTTTTTGAAAATCGCTCGTCGGAGAACTTTTACCGTCGCGGTAACGATAGTTCTGATATTAATCCCTTTTCGGCCGTTCCTTGCGATGGTCCTGGTGGAGAAGGGTCAAGTTATGCGGGGACGGAATTAGGGTCAGGGTTTGGAACGGAAAAAAATGTTGGGATGTCTGCAGTAGGCGAGACATCGGGCTCTGAAAGAGTTCGTTCGCACACGGATGGCCTTCGAATTGTTGGGTTTAGTTCTGAGTCGGATTCAAATACTGACGAAGAGCTTGATAGGGCTATAGAATTCAGTTCTGGTGAAAATGATGGCAATAGAGTCAGTGGCTTTGACGATTTTGATGTTCATTTTTGTTGGGACAGCCTTTGCTTGGAGGATCAGAGGACCCTCAATGAACATTTTGAGTGGGATGATTTAGAGGAAAGAGTCAATGATGGAGAAGACTTGAGCGTGGTGATTGGTGAGGTTGATGATCAATCAGTAGCATCTGGATTTTCCTATGGAGAAGAGTCTGGTGAAGAGGCATTAAGATACCTTGAATGGGAAATCCTGTTAGCGGTCAACAATTTAGAGAGGAATTCAAGCTTGGATCTTGGCGCCACTGCAGGTTCGTTCTTAACAGTTCAGGATGATGGTATGAACACAGCTGAGTATGATATATTTTTTGGACAATTCCTGGAAAATGAGAGTTCTTTGAAGGGCAGCCCTCCTACCGCTAAAAGTGTTATGGAGAATCTTCCTTTAGTAGAATTGACAGAGGAGGACTTGATGGGGGAGAATGTAGCTTGTGCTGTTTGCAAAGATGAAATCATATGGAAGGAAAAAGTGAGAAGGCTTCCCTGCTCGCACTTTTACCACGGGGACTGCATTATGCCATGGTTGAGCATTCGTAATACATGCCCTGTTTGTAGGTTTGAACTGCCCACAGATGATCCTGATTATGAGCAGAGGAAGAGTCAGATAACCGCTCATGAATCTTCTAATGATCTTTTGGAGTTTACACTGTAG 3447 0.4215 MVWKLEFFDYDNLHLCVRTCDFYIEPAGFEAYIIDIMYTASVENGARAASVGDLSTDFDAETDKIVFLEGESPNGEDIGDIGIDSATLTRLELSLAGFSEKITNLSIFMMRLATMDSEFEAFALEEDHVELDSVEKGLEFDLLSGILDSEVGELDNFLHTQRTEIADARQRTSLCNHLGETYMAMKAKLCDFEQYLKQSEEQLSVIKMQLANFQRNLSSFKTEKTVVQEGYSCICSLTSKGPLQFPEKLLWKSDVGKIIRDDNESLNMKPEINMHTAEQQRNILRMLEKSLAREIDLETNLNDSLQIEEELKLRISSLEQELVYAEEEATDAWEKWFEADSANQILMGISRDLLGRLHISQFNLNGSAQRESELRAKLGLANSEDSTISEKVNSLEKQLKESELQLLDTRASADEYQKLYNVLCSDVRDMENLTVELKENASKAESRANSAEAEYKLLAESNAKPNEELALLKEGAAATKKVELLERQLKESDLQLQHAIASAEASQEKQNMLYSTIEDMEIVIRDLKSNVSKFESRADSAEEKHIVLSESNAELNEELRFLRSRLECLEETLHQVEKTKMATAKDIVMHIMDFKTLVTQLAVERERLNKQISSLAFENQILVVKLEKTYRGPPQDINGSNSGSSAREIKEEVCETPVACHKGLVQIQNMYIVLSCAERKSSILVLVYQEDMTGQNLPSKEDEMKPEEAMPDVGTVRGADTGVFSFKSCQVGFQSFTNICSTMANSSQLPSLFSLEDEFEESGPDEQVSDLSSPTAHDNWCPDSSNPFATVCFDHFSNHANWYSDSVSCFVTNLFENRSSENFYRRGNDSSDINPFSAVPCDGPGGEGSSYAGTELGSGFGTEKNVGMSAVGETSGSERVRSHTDGLRIVGFSSESDSNTDEELDRAIEFSSGENDGNRVSGFDDFDVHFCWDSLCLEDQRTLNEHFEWDDLEERVNDGEDLSVVIGEVDDQSVASGFSYGEESGEEALRYLEWEILLAVNNLERNSSLDLGATAGSFLTVQDDGMNTAEYDIFFGQFLENESSLKGSPPTAKSVMENLPLVELTEEDLMGENVACAVCKDEIIWKEKVRRLPCSHFYHGDCIMPWLSIRNTCPVCRFELPTDDPDYEQRKSQITAHESSNDLLEFTL 1148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0997 1148 Coils Coil 517 579 - -
Lele13g0997 1148 Coils Coil 427 461 - -
Lele13g0997 1148 CDD RING-H2_RNF126_like 1076 1117 - -
Lele13g0997 1148 SMART ring_2 1076 1116 IPR001841 -
Lele13g0997 1148 Coils Coil 392 412 - -
Lele13g0997 1148 MobiDBLite consensus disorder prediction 757 776 - -
Lele13g0997 1148 FunFam E3 ubiquitin-protein ligase RING1-like 1037 1123 - -
Lele13g0997 1148 PANTHER WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1 250 651 IPR039976 -
Lele13g0997 1148 Coils Coil 301 328 - -
Lele13g0997 1148 SUPERFAMILY Tropomyosin 310 576 - -
Lele13g0997 1148 Pfam Ring finger domain 1076 1117 IPR001841 -
Lele13g0997 1148 ProSiteProfiles Zinc finger RING-type profile. 1076 1117 IPR001841 -
Lele13g0997 1148 SUPERFAMILY RING/U-box 1056 1124 - -
Lele13g0997 1148 Coils Coil 196 216 - -
Lele13g0997 1148 Coils Coil 482 502 - -
Lele13g0997 1148 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1037 1123 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0997 Lele-ChrLele13 21107589 21117642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0997 994 1131 C3H Transcription Factor Family AT5G15820 50.725 9.35e-44 161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0997 13 21107589 21117642 Lele15g1473 15 8648029 8649249 hybridization
Lele13g0997 13 21107589 21117642 Lele16g1497 16 8620780 8622012 hybridization