Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0989 ATGATGGAAGAGGCAACTACGACAGGTGGGTCACCCACCTCTGACTCAACCCATTGGGTTCACGGCCTACCACAGATAATGCGGAAACTTTTTGACACCACTATCTCATCGCCACGTGGCAACACTGGTTCTCTCTCCCAGCGCAGTTACTACTTACAGAGCCCCCTCTTACTCCGAGCACGACACCCCCCTTCCCTAACATTTCAACAGCCACAGAAAAAGATGCTCAAAGAAGGCAACGGCAATGGCGTCACCAGTAGTAATAGCTGGGCACGTATCTGTGACACGTGCCGCTCTGCTCCCTGCACTGTCTACTGCCGCGCCGACATGGCCTACCTCTGCACCGGTTGCGACGCCCGCATCCACGCCGCCAACCGCGTCGCCTCCCGCCACGAGCGTGTCTGGGTCTGCGAGGCCTGTGAACGTGCCCCCGCGGCGTTTCTCTGCAAAGCTGACGCCGCCTCCCTCTGCTCCGCCTGCGACGCCGACATCCACTCCGCCAATCCCCTCGCCAGCCGTCACCACCGCGTCCCCATTCTCCCCATCTACGGGCCCCCTTCCGCGGGGTCTGCTCCCGACGGGGATGATGGTTTCCTAGCTCACGGAGGCGACGAGGCGGAGGAGGAGGAGGTCGTTGATGAAGAGGATGAAGACGAGGCTGCATCCTGGTTGTTGCTGAATCCTGTGAAGAACAACAATTCCAACAACAACAATCAGAGCAATGGGTTTTTGTTTGGTTCTGGGGAGGTTGATGATTATTTGGACCTCATGGATTCCAATTCATGTGCTGATAGTCAGTTGACTGATCATTACAATCAGCAGCAACACTACGGTGTTCCTCAGAAGAACTATGTCAGTGACAGTGTCGTCCCGGTTCCGCAGCAGCAGCATTTTCAGTTGGGTTTGGACTTCGATTCGTCAAAAGCTTGCAACAGTGCTTTCAACGGTTCAGTTACTCAAAATGTTTCGATTTCGTCAATAGATGTTGGCATTGTACCCGAATCAACTATCAGCGATGGCTCGATTTCTCATTCAAGACCTCTAAAAGGGACAATTGACCTATTCTCTGGGCCTCCAATTCAGATACCTTCGCAGCTGAGTCCGATGGACAGGGAGGCTAGGGTGTTAAGATACAGGGAGAAGAAGAAGGCAAGAAAGTTTGAGAAGACAATAAGGTATGCGTCCAGGAAGGCTTATGCAGAGACCAGACCTCGCATCAAAGGTCGATTTGCAAAGAGAACAGAGGTGGAAGCTGAAGTGGACCAGATGTTCTCTACTTCTCTAATGACGGAAACTGGATATGGCATTGTTCCTTCTTTCTGA 1323 0.5291 MMEEATTTGGSPTSDSTHWVHGLPQIMRKLFDTTISSPRGNTGSLSQRSYYLQSPLLLRARHPPSLTFQQPQKKMLKEGNGNGVTSSNSWARICDTCRSAPCTVYCRADMAYLCTGCDARIHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSACDADIHSANPLASRHHRVPILPIYGPPSAGSAPDGDDGFLAHGGDEAEEEEVVDEEDEDEAASWLLLNPVKNNNSNNNNQSNGFLFGSGEVDDYLDLMDSNSCADSQLTDHYNQQQHYGVPQKNYVSDSVVPVPQQQHFQLGLDFDSSKACNSAFNGSVTQNVSISSIDVGIVPESTISDGSISHSRPLKGTIDLFSGPPIQIPSQLSPMDREARVLRYREKKKARKFEKTIRYASRKAYAETRPRIKGRFAKRTEVEAEVDQMFSTSLMTETGYGIVPSF 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0989 440 SMART bboxneu5 89 136 IPR000315 GO:0008270
Lele13g0989 440 SMART bboxneu5 137 179 IPR000315 GO:0008270
Lele13g0989 440 Pfam B-box zinc finger 134 179 IPR000315 GO:0008270
Lele13g0989 440 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 94 428 IPR045281 GO:0009909
Lele13g0989 440 CDD Bbox1_BBX-like 136 179 - -
Lele13g0989 440 Pfam CCT motif 371 413 IPR010402 GO:0005515
Lele13g0989 440 ProSiteProfiles Zinc finger B-box type profile. 132 179 IPR000315 GO:0008270
Lele13g0989 440 CDD Bbox1_BBX-like 93 136 - -
Lele13g0989 440 ProSiteProfiles CCT domain profile. 371 413 IPR010402 GO:0005515
Lele13g0989 440 ProSiteProfiles Zinc finger B-box type profile. 89 136 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0989 Lele-ChrLele13 21062499 21064408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0989 75 440 C2C2-CO-like Transcription Factor Family AT3G02380 57.672 7.36e-139 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lele13g0989 zf-B_box 5.6e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0989 13 21062499 21064408 Lele15g1481 15 8696626 8698330 hybridization
Lele13g0989 13 21062499 21064408 Lele16g1507 16 8667405 8669145 hybridization