Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0956 ATGGTTGCAAGAAAACGAGGTCGGACTCTAGGGTTAAGGTTGAGCAGTCGCTGCTTCTGCTCGTTCAGAAACCCGGCTAAGTGGGAGGGTAGGCTGCTTCTGCTTTCACCATATAAAATGAAAGAGGATCACGGGCTAGGGTTTTGGAGAAAGAGAAAGAAATTTGCAGAAGTGCCTTGCAGGGCCAGACCTTATGGTGGGCCGTTTTGTGGAAGCTTTCAAAGCCCATTATTTGTTTGTTCTCTGCAAATGAACGATGGGATTGGTGACTCTCAGCTCTTTCTTGACATTATGTTTGGTTTGCAGTTCCATCAGTATCAGGTCGTTGGAAGGGCTCTTCCTACGGAATCAGATCAACACCCAAAGATTCGCATGAAGTTATGGGCCACTAATGAGGTTCGCGCCAAGTCGAAGTTCTGGTATTTTTTGAGGAAACTGAAGAAGGTCAAAAAGAGCAACGGTCAAGTGCTTGCTATCAATGAGCATATCAATTCTCAGAAGTCATCTGATATAGCACTTCATGGATTTCTGCTGTGGGCTTCGATGGGATTCTCAATGCCATTAGGGATACTTACTATCAGAATGTCAAGTAGAGAGGGAAATGGATCAACAAGGAATAGGGTCCTCTTTTATCTCCATGTTGCATTTCAGATACTCTCAGTGCTTCTTGCTACAGTTGGAGCTGTCATGTCCCTGAAGAACTTTGAGAATTCATTTGATAACAACCATCAAAGAATAGGTCTTGCACTTTATGGTGCTATATTGGTTCAATCTTTGATTGGATTTTTCAGGCCTCACAGGCAAAAGAAAGAGAGGACTTATTGGTACTTTGTTCACTGGATATTAGGGACAATAATCTCTTTTGTGGGGATCATGAACATTTACACAGGTCTCAGAGCTTACCATAAGAGAACCTTAAAAAGCACAACGCTTTGGACTATTCTCTTTACAGCACAAGTCTGTTGCATTGCATTGATTTACCTCTTACAAGACAAAATGGAGTACATAAAAAAGCAAAGGGTGATTCCAGGCACAGAGTCAACTATTCCTTCTGAACAAGACATTCCTCATTTGCAGAACCAGAATGAGTTATTACCAGTAGTAGCATGTGGGAAGAAAAATGCACTTAGCAACTTGTTTGACCAATAA 1149 0.4195 MVARKRGRTLGLRLSSRCFCSFRNPAKWEGRLLLLSPYKMKEDHGLGFWRKRKKFAEVPCRARPYGGPFCGSFQSPLFVCSLQMNDGIGDSQLFLDIMFGLQFHQYQVVGRALPTESDQHPKIRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEHINSQKSSDIALHGFLLWASMGFSMPLGILTIRMSSREGNGSTRNRVLFYLHVAFQILSVLLATVGAVMSLKNFENSFDNNHQRIGLALYGAILVQSLIGFFRPHRQKKERTYWYFVHWILGTIISFVGIMNIYTGLRAYHKRTLKSTTLWTILFTAQVCCIALIYLLQDKMEYIKKQRVIPGTESTIPSEQDIPHLQNQNELLPVVACGKKNALSNLFDQ 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0956 382 SMART 561_7 173 298 IPR006593 -
Lele13g0956 382 Gene3D - 95 167 - -
Lele13g0956 382 CDD Cyt_b561_FRRS1_like 171 331 - -
Lele13g0956 382 Coils Coil 376 382 - -
Lele13g0956 382 Pfam Eukaryotic cytochrome b561 173 298 IPR006593 -
Lele13g0956 382 PANTHER OS05G0565100 PROTEIN 152 341 IPR045150 GO:0140575
Lele13g0956 382 FunFam 60S ribosomal protein L18a 98 167 - -
Lele13g0956 382 Hamap 50S ribosomal protein L18Ae [rpl18a]. 103 166 IPR028877 -
Lele13g0956 382 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 104 174 IPR023573 GO:0003735|GO:0005840|GO:0006412
Lele13g0956 382 ProSiteProfiles Cytochrome b561 domain profile. 143 337 IPR006593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0956 Lele-ChrLele13 20762801 20768591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0956 98 161 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 86.154 2.37e-30 114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0956 13 20762801 20768591 Lele13g0956 13 20762801 20768591 ECH
Lele13g0956 13 20762801 20768591 Lele16g1540 16 8926621 8931193 hybridization