Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0948 ATGGGTCGTCGGAAGATCAAGATGGAGAGGGTGAAGGACGCGGCGTCGAGATTGGTGACTTTCTCAAAGCGCCGGAACGGACTCTTCAAGAAAGCGAACGAGCTAGCAATCCTGTGCGGCGCCGAACTCGCCATTGTCGTGTTCTCGCCTGGTGGCAAGCCATTCTCCCTCGGCCATCCGTCTGTCCACGTCGTGACTGAGAGGTTTCTACGGCAACTCCAAAAGGAGGACGATGACGATGCGGAAGAGGAAAAATCGCCGGCAGGCGGGACCTCGAAGAAAGCTTACCGAAAAGCGGAGAAACTGAACCAGCGGCTGATGAATCTGACGAAGGAGCTGGAGGAAGAGAAGAAAAAGGGGGCGATGCTGGACAAGGCGATAGAGGAGAACAAGATCAAATATGGGCTGGGGCCTGAGGCCGTTTCCGATGATCTGAGCAAGCTTGAGGGATTGAAGCGATCGCTGGGGAAACTTAGGGAAGACGTGAAGCTGCGGAAGAGAGAAATGGAGGCTGCGTCGTCGTTGCTGGTACTTGCAGAGAAATTACAGTTGAAGGAAGACGAGAATGTTGCTGAAAGTGAAGAAGATGATGGCGGTGAGATCAGAAATGGAAAGGAACAAATTCAGAAGACTGTTTCTGTGTCGGTTTTTGTAGAGAAGGAAAATGAGTCATGA 675 0.52 MGRRKIKMERVKDAASRLVTFSKRRNGLFKKANELAILCGAELAIVVFSPGGKPFSLGHPSVHVVTERFLRQLQKEDDDDAEEEKSPAGGTSKKAYRKAEKLNQRLMNLTKELEEEKKKGAMLDKAIEENKIKYGLGPEAVSDDLSKLEGLKRSLGKLREDVKLRKREMEAASSLLVLAEKLQLKEDENVAESEEDDGGEIRNGKEQIQKTVSVSVFVEKENES 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0948 224 MobiDBLite consensus disorder prediction 187 207 - -
Lele13g0948 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele13g0948 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele13g0948 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele13g0948 224 PANTHER MADS BOX PROTEIN 3 164 - -
Lele13g0948 224 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele13g0948 224 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele13g0948 224 Coils Coil 92 126 - -
Lele13g0948 224 MobiDBLite consensus disorder prediction 74 97 - -
Lele13g0948 224 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Lele13g0948 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Lele13g0948 224 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
Lele13g0948 224 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0948 Lele-ChrLele13 20731699 20732373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0948 1 120 Type I MADS-box Gene Family AT2G34440 57.851 9.58e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele13g0948 SRF-TF 2.2e-22 No_clan