Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0925 ATGTCATGGCCCTGGACCTCTGGAAGGGAGAAGGAGGATAGTATTTCACTGGGAGTTGCATCTGTTCATGCTACATTGAGTCTAATGAATGAAGTTGTGTATGGACTTAAGGGCGATGCAATGAAGCAGTCTTTTGACATTTCGGCTTCTGGTCCAACCGAGATTCCATCTATAAATATTCCCAAAGAAGTGGGACGCCAAGCTTGGGAGGTTTCATCTGGATCTGATGCCTGCCCTACTTCATCAGATGCTAGTCTTTTTTCTAGCTCATTACCTGTTTTGCCACATGAAAAGTTGAACTTGAACGACACCAAAAATGAGTATCAGTCTGTGGATGACATCTCATCTGGTTTTAAAAAGCTCCACCAAGATTTAGAGGTTAATGAATCACTTGAAGATGCAAATATTCATGCACTTGGAACAACGCTTCCAGATGATGAGGATGAGCTTTTAGCTGGCATAACAGATGATTTTGACCTGAGTGGTTTGCCCGGTTCCCTGGAGGACTTGGAAGATTATGATCTTTTTGGTGGTGGAGGTATGGAAATGGAAAATGATCCTCATGAAAGCATTACAGTGGGGATTTCAAAATTAAGTTTCTCTGATGGTACAATGGGCAATGGTTTGCCCCATTATTCTTTTCCTAATGGTGTTGGAACTGTTGCTGGGGAACATCCGTATGGGGAACATCCTTCTCGAACATTATTTGTTCGAAATATTAACAGTAATGTAGAGGACTCAGAATTGAGAGCCCTTTTTGAGCAATATGGTGATATTAGAACCCTCTATACTGCATGTAAACATCGGGGGTTTGTAATGATATCCTACTATGACATCCGTGCTGCTCGAACAGCTATGCGTGCATTACAAAACAAACCACTGCGGCGGAGGAAACTTGACATTCATTTCTCAATACCAAAGGATAATCCATCGGACAAGGATATAAATCAAGGAACCTTGGTGGCTTTTAATTTGGATCCATCAGTTTCAAATGAAGACCTTCGACAAATATTTGGGGCTTATGGCGAGGTTAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAATTTGTTGAATTTTATGATGTTAGGGCAGCAGAAGCGGCACTTAAATCATTGAACAGGAGTGACATAGCGGGTAAACGTATAAAGCTGGAACCTAGTCGTCCTGGTGGAGCTCGTAGGAATTTGATGCTCCAACTAAATCCAGATCTTGATCAAGATGAATCTCAGAACTATCGACATCAAGTGGGTTCACCTGTAGCCAACTCTCCACCAGGTAAGTGGTTGCAGTTTAACAGCCCCATTGAACATAAGCCAATGCAATCTATCAGTAATTCTCCTGGTTCTAGGATTATGAGCGCAACAACTGGCAACCGTTTACCAGGATTAGCTTCAATCTTGCAACCTCAAGGATCTAACTCTATAAAAGGTGCAGCTATTGGTAAGGACCTAGGAAGGAGTAGTCATGGAGATCACGTGTTTAGTAGTACCAATGCATCACATGGAGCCACATTTCAATCTCACTCACTTCCAGAACCAACATTCGGCCAATATCATCAAGCTTTGTCCTCTTTTGGTCCATCAACTTCAAATGGATCTTCTGTGGAAACCTTGTCTGGGCCTCAGTTTCTTTGGGGAAATTCAAGCTTATACTCTGAGCACACTAAACCTTCACCTTGGCCTAGACCATCTGTAGGGCCTCCATTCACATCGAATGGAAAGGGTCATGGCTTTCCATACTCTGGTCAGAATGGCTCCTTTGTTGGATCTTCCCAGCATCATCTTCATCATCATGTAGGCTCTGCTCCATCAGGTGTTCCATTTGAGAGGCGCTTTGGTTTTCTTCCTGAATCTCCTGAAACCTCATTTATGAATCATGTTGGTTATGGAGGCTTAAATGTGGGACACAATGATGGAAACTACATGGTTAACATGGGTGGATCTGTTAATGCTGGCATTACTATGCCGAGGAATATGTCTGAAAATGTTCAATCAAAGTTCAGAATGAGATCTTCTCCAAGGCTTAGCCCTGTGTTTCTGGGTAATGGTCCTTACTCTGGGGTTCCACTCACTGCCCTGGACGGTTTGACTGACCGTGGAAGGAGTAGACGGCTAGAGAATAATGGTAACCAAGTTGATAGCAAAAAGCAATTTGTGCTTGACTTGGATAAGATTAGAAGTGGTGAAGATGCAAGGACTACTTTAATGATAAAGAATATCCCAAATAAGTACACTTCAAAAATGCTACTAGCTGCCATTGACGAAAATCACAGGGGCACCTATGATTTCCTCTATCTGCCTATTGATTTTAAGAATAAGTGTAATGTGGGTTATGCATTTATCAACATGCTGTCACCCTCTCTCGTCATTCCATTCTATGAGACATTCAATGGAAAGAAGTGGGAGAAGTTTAATAGTGAGAAAGTTGCTTCTTTGGCGTATGCCCGAATCCAAGGAAAGGTTGCCCTTGTGAGCCACTTCCAGAATTCAAGTTTGATGAATGAAGACAAGCGATGCCGCCCTATTCTCTTCCACTCGGAGGGTCCTGAAGCCGGTGATCAGATCTTACAAGAACATCTTCCCTCCAACAATCTCAACATCCAGGTCCTCAGGTCAAATGATTCACATTTGAATGACTCTCCTGGAAGCCCCCTCAATGATAACCCTCCTGTGAACTTGGAGACAAGTTAA 2697 0.4271 MSWPWTSGREKEDSISLGVASVHATLSLMNEVVYGLKGDAMKQSFDISASGPTEIPSINIPKEVGRQAWEVSSGSDACPTSSDASLFSSSLPVLPHEKLNLNDTKNEYQSVDDISSGFKKLHQDLEVNESLEDANIHALGTTLPDDEDELLAGITDDFDLSGLPGSLEDLEDYDLFGGGGMEMENDPHESITVGISKLSFSDGTMGNGLPHYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVAFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFVEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNPDLDQDESQNYRHQVGSPVANSPPGKWLQFNSPIEHKPMQSISNSPGSRIMSATTGNRLPGLASILQPQGSNSIKGAAIGKDLGRSSHGDHVFSSTNASHGATFQSHSLPEPTFGQYHQALSSFGPSTSNGSSVETLSGPQFLWGNSSLYSEHTKPSPWPRPSVGPPFTSNGKGHGFPYSGQNGSFVGSSQHHLHHHVGSAPSGVPFERRFGFLPESPETSFMNHVGYGGLNVGHNDGNYMVNMGGSVNAGITMPRNMSENVQSKFRMRSSPRLSPVFLGNGPYSGVPLTALDGLTDRGRSRRLENNGNQVDSKKQFVLDLDKIRSGEDARTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLVIPFYETFNGKKWEKFNSEKVASLAYARIQGKVALVSHFQNSSLMNEDKRCRPILFHSEGPEAGDQILQEHLPSNNLNIQVLRSNDSHLNDSPGSPLNDNPPVNLETS 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0925 898 Pfam RNA recognition motif 2 734 830 IPR007201 -
Lele13g0925 898 CDD RRM2_MEI2_like 317 387 - -
Lele13g0925 898 FunFam MEI2-like protein 5 isoform 2 222 316 - -
Lele13g0925 898 FunFam Protein MEI2-like 1 317 412 - -
Lele13g0925 898 CDD RRM3_MEI2_like 737 822 IPR034454 -
Lele13g0925 898 MobiDBLite consensus disorder prediction 556 605 - -
Lele13g0925 898 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 233 306 IPR000504 GO:0003723
Lele13g0925 898 PANTHER RNA RECOGNITION MOTIF-CONTAINING 82 852 - -
Lele13g0925 898 SMART rrm1_1 319 387 IPR000504 GO:0003723
Lele13g0925 898 SMART rrm1_1 234 302 IPR000504 GO:0003723
Lele13g0925 898 SMART rrm1_1 736 812 IPR000504 GO:0003723
Lele13g0925 898 MobiDBLite consensus disorder prediction 875 898 - -
Lele13g0925 898 SUPERFAMILY RNA-binding domain, RBD 230 392 IPR035979 GO:0003676
Lele13g0925 898 Gene3D - 222 318 IPR012677 -
Lele13g0925 898 SUPERFAMILY RNA-binding domain, RBD 736 820 IPR035979 GO:0003676
Lele13g0925 898 CDD RRM1_MEI2_like 232 308 IPR034453 -
Lele13g0925 898 MobiDBLite consensus disorder prediction 578 593 - -
Lele13g0925 898 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 299 IPR000504 GO:0003723
Lele13g0925 898 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 324 385 IPR000504 GO:0003723
Lele13g0925 898 Gene3D - 319 414 IPR012677 -
Lele13g0925 898 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 318 391 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0925 Lele-ChrLele13 20618561 20624238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0925 228 426 Eukaryotic Initiation Factors Gene Family AT1G71770 25.561 5.50e-06 48.1