Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0924 ATGAGCTTCTCAGCATCAGCTACGAGCAACATGAAGAGCATTACCAACAACCCGAACAGAGACAAAGCCATTGCTCAGTACCGTGCTGATGCTGAGATTTTCTCCGAGTTTGGGCGTTCTAGCGGGACTGGCAAATCGTTCGACTACTGGAGGTCTGTGCTTTACCCTCCAAACTCGGTGTCGGAAGAGAAAATGACGACTTATTTGTCGAATATCCAGAGAGGGGGTCTCATTCAGCCCTTTGGTTGCATGATTGCAATTGAAGAAGCCACTTTCAGGATCATCAGCTATAGTGAGAATTGTTTTGAATTGTTGGGTTTAGAGAGACGTTTTGATTCGAAACAACTGATGGGTTTGATTGGAGCTGATGTGAGAAACCTGTTCACGCCTTCTTCTGGGGCTTCCTTTGCAAAAGCTGCGGCGTCAGAGGAAATATCACTTTTGAACCCGATTTGGGTCTATTCAAGGACAACTCAGAAACCATTCTATGCAATATTGCATAGGATTGATGTGGGGATTGTGATTGATTTAGAATCTGCACGGTCCAATGATCATGCTCTGTCGCTCGCTGGAGCAGTACAGTCACAAAAACTTGCAGTTCGAGCAATTTCAAGGCTGCAATCTCTTCCTGGCGGAGATATTGGCGTGTTGTGTGATATGATTGTTGAAGAAGTCCAGAAGCTTACTGGATATGACAGGGTTATGGTTTATAAGTTCCACAAGGATGATCACGGTAAAGTTGTATCAGAAATTAGAAGGTCAGACTTGGAACCCTATTTGGGTTTACATTATCCTGCCACGGATATCCCTCAAGCTGCTCGCTTCTTATTTAAGCAAAACCGCGTCAGGATGATATGTGATTGCCATGCAAATCCAGTTAAAGTCATACAGAGTCAACAATTAAGGAAACCGCTTTGCCCGGTCAATTCAACCCTTCGGTCACCACATGAATGCCACGCACAATACATGGCTAATATGGGCTCTATTGCTTCTCTGGTTATAGCAGTTATAGTCAATGGAAATGATACAACAAAGCTTTGGGGCTTATTAGTTTGTCATCACACTTCACCACGTCACGTGCCTTTCCCTCTTCGCTATGCTTGTGAGTTCCTCATACAGGCTTTTGGACTGCAGCTTTACATGGAGATGCTGCGAGCATCACAAATGGCAGAGAAGAGAACGCTTAGAACACAGACCTTATTATGTGATATGCTTCTCCGCGATGCCCCATTGGGTATTGTCACTCAGTCTCCCAGTATCATGGATCTCGTGAAGTGTCATGGGGCAGCATTGTATTATGGTAGAGATTGTTGGCTATTAGGCACCACCCCAACTGAGTCACAGGTAAAAGACATTGCAGAATGGCTACTCAGTAATCATGGGGACTCGACAGGTTTGAGCACGGATAGTTTGGCCGAAGCTGGTTATCCAGGAGCTGCTTTACTGGGGAATGCAGTTTGTGGCATGGCAGCAGCAAGAATAAATATGAGAGATTTTTTGTTCTGGTTCAGATCTCACGCTGCCAAGGAAGTTCATCCGGGAGGAGCCAAGTACCAACTAGAGGATAAAGATGATGGAGGAAACATGAACCCAAGATCATCGTTTAAAGCTTTCCTTGAAGTAACCAAAAGCAAAAGCTTGCCTTGGGAAGTGTTAGAAATCAATGCTATTCACTCATTGCAGCTTGTAGTGCGAGAATCCTTCCAAAACAAACAGAACTTTGGTCCTAAGACACTTAGTTGTGCTCAGCGTAGTGATACTGCAATGGCTGGGATGGATGAACTCAGTTCGGTGGCATTTGAGATGGTTAGATTAATTGAGACAGCAACAGTTCCAATTTTTGGAGTTAATTCAGCTGGTCTAATAAATGGATGGAATGCCAAAATTGCAGAATTGACTGGGCTGCAGGCCAGTGAAGCTATGGGGAAATCCCTAGTAAATGAAATAGTCCATGCTGACTCACGTGAAACTGTTGAAAATATTTTGACCAGAGCCTTGCAAGGCCAGGAGGACAAAAATGTTGACCTGAAACTAAAGCATTTTGGGCTTCATCAACAAAAGTTAGTTATATATATCATAGCAAATGCATGCACAAGTAGGGATCACAAAAGTGCTGTTGTTGGGGTATGCATTGTGGGTCAAGATATCACTTATGAAAAAGTTTTCCAAAACAAATTTATCAAGTTGGAAGGCGATTACAAGGCTATCATCCAGAGTGTCAATCCATTGATTCCACCAATATTTGCTTCTGATGAGAATGCCTGCTGCTCTGAATGGAATGCAGCCATGGAAAGGTTGACAGGTTGGAAGAGAGATGAAGTTATTGGAAAAATGCTTCCAGGGGAAATCTTCGGGGGTCTATGTCAACTGAAAGGTCGAGATACATTGACCAACTTTATGATTTCATTGTATAGAGGAATCAGTGGTCAAGATTCTGAGAAATGCTCTTTTGGATTTTTTAGTAGAACAGGAGAATTTGTGGAGGTTTTCTTAACAGCAAACAAGAGGAATGATGCATGTGGGAATATTATTGGCAGTTTCTGCTTCTTGCAGATTGTATCACCTGACCCTTGTCAACCATTAGAAGGACAGAAGTCAGAGGGTAAGTCAAGCTTTTCCAAGTTCAAGGAGCTGGCTTATATACTTCAAGAGATGAAGAATCCTTTGAATGGTATGCGCTTCACACACCAACTCTTGGAGAACACGGCTGTCTCAGAAAATCAAAAACAATTTCTTGATACCAGTAATGCATGCGAGAGACAGATCATGTCCATTATTGAGAACACAGATTTAGCAAGCATTGACGAGGGCACCGTGAAGCTAAACGATGAAGAATTTCTTCTGGGAAATATATTAGATGCTATTGTAAGTCAAGTCATGATCTCCATAAGAGGGAACAACTTGCGGCTGTTTCACGAAATTCCTGATGATATCAAGACGCTTACCCTATGTGGTGATCAAATTAGGCTTCAGGTGGTCTTGTCTGACATTTTGCTTAATGTGGTGAGCCACACACCATCCCCAAATGGCTGGATAGAAATTAAGATTTCACCCGGTTTGAAGACGATGCAAGATGGCAACGAGTTTATCCATCTCCAGTTCAGAATGACACATGAGGGTCGAGGCATTCCTTGTGTTGTTCTTCAGGATATGTTTGAAGAAGAGGATCAATGGACTACACAGGAAGGTCTAGGGCTAAATATGTCCCGGAAAATCCTCAGTAGGATGAATGGTCGTGTTCACTATGTAAGAGAACATAACAAGTGCTACTTCCTCATTGATCTTGAACTTAGAACAAGAAAATAA 3306 0.428 MSFSASATSNMKSITNNPNRDKAIAQYRADAEIFSEFGRSSGTGKSFDYWRSVLYPPNSVSEEKMTTYLSNIQRGGLIQPFGCMIAIEEATFRIISYSENCFELLGLERRFDSKQLMGLIGADVRNLFTPSSGASFAKAAASEEISLLNPIWVYSRTTQKPFYAILHRIDVGIVIDLESARSNDHALSLAGAVQSQKLAVRAISRLQSLPGGDIGVLCDMIVEEVQKLTGYDRVMVYKFHKDDHGKVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCHANPVKVIQSQQLRKPLCPVNSTLRSPHECHAQYMANMGSIASLVIAVIVNGNDTTKLWGLLVCHHTSPRHVPFPLRYACEFLIQAFGLQLYMEMLRASQMAEKRTLRTQTLLCDMLLRDAPLGIVTQSPSIMDLVKCHGAALYYGRDCWLLGTTPTESQVKDIAEWLLSNHGDSTGLSTDSLAEAGYPGAALLGNAVCGMAAARINMRDFLFWFRSHAAKEVHPGGAKYQLEDKDDGGNMNPRSSFKAFLEVTKSKSLPWEVLEINAIHSLQLVVRESFQNKQNFGPKTLSCAQRSDTAMAGMDELSSVAFEMVRLIETATVPIFGVNSAGLINGWNAKIAELTGLQASEAMGKSLVNEIVHADSRETVENILTRALQGQEDKNVDLKLKHFGLHQQKLVIYIIANACTSRDHKSAVVGVCIVGQDITYEKVFQNKFIKLEGDYKAIIQSVNPLIPPIFASDENACCSEWNAAMERLTGWKRDEVIGKMLPGEIFGGLCQLKGRDTLTNFMISLYRGISGQDSEKCSFGFFSRTGEFVEVFLTANKRNDACGNIIGSFCFLQIVSPDPCQPLEGQKSEGKSSFSKFKELAYILQEMKNPLNGMRFTHQLLENTAVSENQKQFLDTSNACERQIMSIIENTDLASIDEGTVKLNDEEFLLGNILDAIVSQVMISIRGNNLRLFHEIPDDIKTLTLCGDQIRLQVVLSDILLNVVSHTPSPNGWIEIKISPGLKTMQDGNEFIHLQFRMTHEGRGIPCVVLQDMFEEEDQWTTQEGLGLNMSRKILSRMNGRVHYVREHNKCYFLIDLELRTRK 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0924 1101 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 985 1096 IPR003594 -
Lele13g0924 1101 Gene3D - 194 544 IPR029016 -
Lele13g0924 1101 Gene3D - 915 1091 IPR036890 -
Lele13g0924 1101 SUPERFAMILY GAF domain-like 391 570 - -
Lele13g0924 1101 Pfam PAS fold 68 179 IPR013654 GO:0006355
Lele13g0924 1101 ProSiteProfiles Histidine kinase domain profile. 880 1099 IPR005467 -
Lele13g0924 1101 SMART HKATPase_4 985 1099 IPR003594 -
Lele13g0924 1101 TIGRFAM sensory_box: PAS domain S-box protein 605 723 IPR000014 -
Lele13g0924 1101 Pfam His Kinase A (phospho-acceptor) domain 877 937 IPR003661 GO:0000155|GO:0007165
Lele13g0924 1101 SUPERFAMILY PYP-like sensor domain (PAS domain) 746 848 IPR035965 -
Lele13g0924 1101 Pfam Phytochrome region 396 571 IPR013515 GO:0006355|GO:0009584
Lele13g0924 1101 SUPERFAMILY PYP-like sensor domain (PAS domain) 72 183 IPR035965 -
Lele13g0924 1101 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 930 1090 IPR036890 -
Lele13g0924 1101 Gene3D PAS domain 600 720 - -
Lele13g0924 1101 SMART HisKA_10 873 937 IPR003661 GO:0000155|GO:0007165
Lele13g0924 1101 SUPERFAMILY PYP-like sensor domain (PAS domain) 604 712 IPR035965 -
Lele13g0924 1101 CDD HisKA 878 928 IPR003661 GO:0000155|GO:0007165
Lele13g0924 1101 SMART pas_2 731 801 IPR000014 -
Lele13g0924 1101 SMART pas_2 600 667 IPR000014 -
Lele13g0924 1101 ProSiteProfiles PAS repeat profile. 598 669 IPR000014 -
Lele13g0924 1101 ProSiteProfiles PAS repeat profile. 732 784 IPR000014 -
Lele13g0924 1101 CDD PAS 609 716 IPR000014 -
Lele13g0924 1101 FunFam Phytochrome 745 853 - -
Lele13g0924 1101 FunFam Phytochrome 594 726 - -
Lele13g0924 1101 PANTHER OS08G0260000 PROTEIN 64 934 - -
Lele13g0924 1101 Gene3D PAS domain 745 856 - -
Lele13g0924 1101 Pfam PAS fold 732 851 IPR013767 GO:0006355
Lele13g0924 1101 Pfam PAS fold 601 716 IPR013767 GO:0006355
Lele13g0924 1101 ProSitePatterns Phytochrome chromophore attachment site signature. 313 322 IPR013516 -
Lele13g0924 1101 CDD HATPase_Phy-like 985 1097 IPR044767 -
Lele13g0924 1101 PIRSF Phytochrome_conventional 1 1101 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Lele13g0924 1101 SUPERFAMILY GAF domain-like 193 379 - -
Lele13g0924 1101 PRINTS Phytochrome signature 128 150 IPR001294 GO:0006355|GO:0009584
Lele13g0924 1101 PRINTS Phytochrome signature 313 334 IPR001294 GO:0006355|GO:0009584
Lele13g0924 1101 PRINTS Phytochrome signature 228 247 IPR001294 GO:0006355|GO:0009584
Lele13g0924 1101 PRINTS Phytochrome signature 601 617 IPR001294 GO:0006355|GO:0009584
Lele13g0924 1101 PRINTS Phytochrome signature 620 635 IPR001294 GO:0006355|GO:0009584
Lele13g0924 1101 PRINTS Phytochrome signature 413 433 IPR001294 GO:0006355|GO:0009584
Lele13g0924 1101 PRINTS Phytochrome signature 498 517 IPR001294 GO:0006355|GO:0009584
Lele13g0924 1101 PRINTS Phytochrome signature 694 711 IPR001294 GO:0006355|GO:0009584
Lele13g0924 1101 PRINTS Phytochrome signature 714 734 IPR001294 GO:0006355|GO:0009584
Lele13g0924 1101 PRINTS Phytochrome signature 531 549 IPR001294 GO:0006355|GO:0009584
Lele13g0924 1101 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 213 373 IPR016132 -
Lele13g0924 1101 SMART gaf_1 213 393 IPR003018 GO:0005515
Lele13g0924 1101 Gene3D PAS domain 71 316 - -
Lele13g0924 1101 CDD PAS 743 851 IPR000014 -
Lele13g0924 1101 Pfam GAF domain 213 382 IPR003018 GO:0005515
Lele13g0924 1101 FunFam Phytochrome 388 512 - -
Lele13g0924 1101 Gene3D - 388 561 IPR043150 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0924 Lele-ChrLele13 20613088 20617790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0924 4 1099 Histidine Kinase Gene Family AT4G18130 61.331 0.0 1419