Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0916 ATGCTTGAAATAGGCCCACATTATGGCCCTGTAAAATCGTACATTTCACTTTCCAGGCAAAATTCTCTTCCTGGTTTCATGAAAAAGTGGCTGGAATTACCATTTAGCAATGGGGCATCGCCAAGTCTTAATGCATTTGCAGCAGGTCAAGCTTCTGGATACAAGATGTTTCAGACTATTAAAAGAAAACCCAAAATTGATGCTTATGACACTAATGGGGTTGTCTTGGAGGACATCGAAGGAGATATTGAGCTTAAAGATGTTTATTTCAGATACCCTGCAAGGCCAGACGTACAGAAGGCCCTGGTGAAGCTGAAGATGGAAAAAAAATCTGAAACAGATAAGGCCACTACCAGTCATATAGACAGAAACATGGCTTCCTCTGAGAACCCCAAATCATCGTTGAGATCAATTAGCAGAGGAGTTGATGAACTTGGAAAAACCAAATCTGCCAATGTCAAGCGACAAGAGGTTTCTCTTATACAAATCAGTTGGTTTGATGATCCTGCAAATTCAAGTGGTGCAGTTGGTGCGAAGTTATCTACAGATGCTTCATCAGTGAGAGGTCTTGTTGGTGACACCTTGGCCCTCATTGTGCAGAACATAAAAACAGTAATTACAGGCCTCCTTATAACATTTATAGCTAATTGGAGACTCTCTTTAGTGGTTCTTGCTGTATCACCTTTGATTCTTTTGCAAGGAGTATTTCAAGAGAGGTTTCTGAAAGGGTTTAGTGCAGATGCTAAGCTGATGTCTGAAGAGGCCAGTAAGGTGGCAAATGATGCGGTTTGTAGCATAAGAACTGTTGCATCATTCTGTGCTGAACCTAAGGTCACGGAAATGTGTGGGAAGAAATGTGAAGGGCCAGAAAAACAAGGCATTCGACTAGGTCTCGTTAGTGGTACAGGTTATGGCTTCTCTTTCTTTGCTTTATACTGCACAAATGCTCTGTGTTTCTACGTTTTCTTTTCTTTGACAATTACAGCAATAGGGGTTTCCCAGACCAGTTCCATGGCACCAGACCGCAACAAGGCCAAGGACTCCACAGCTTCAATATTTGAAATTCTGGACAGTAAACCCAACACTGACTTTAGTAGCGATGAGAGCGTAGCATCATATTCTGTAAAAAGTGATATTGAACTCAGAAATGTCAGCTTCAAATACCCAACAAGGCCTGATGTTCAAATTTTCAGAGACCTGAACCTAACCATACCCTCTGGGAAGACCCCAATCATGCCATCAGCTTCGAAAAGGAGAAAAGCTGCCAAGAAAAAAAAGGTAAAGGAGGCTAATATCAACCCCTTAAGTGATGGCCAGCAAGACATGTTAGGAAGTGATGACTTGAAGTCCCAAGATGAGAGAGGAAGCGATGCTGGTGAGGTTAGTGATTTTGAGAGCGTTGGATTGGTTAAAACAAAGGAGGATACTGAAGAATCAAATCGTGGGAATAAAAGTGCCGATGCTACTTCAACCTACGGATCCCCATCTGAGAAGGACTCGGATTTTAAATCCTGTAATTCAATACTAGAGCCAACGACATCTGAGTATTTGGGTAAATACTCTGATCCTGCACCAGCACAAATGACTTTGGTTACTGAAAATACACCATATAAGGAGACCGATAACTCAGTTAAGCCAGAGAGTTCTGTGCCTAAGGAGAAAAGCAGTGTTACTGAAAGTTCCTTGCTAGGGAAGTCACCAGTTGCTAAAGTAGGAGCAGCAGATCTTGGTATGAAAAGAAATGATGATAAAGTAGGTCCCTTCTCTGATGAAAATGCTAGAGTATTAAGTTTGGAGGAACCTAAACAAAAGGAATATGATAGTAATTTACCAAATTCATCATATGGTAGCCCTATCCCTGAATCTTCTAATGCTATAGAACATGCCAAAGATTCTGAAATTCCAGAATGCTCTGAAGATCAGCCCCTAGTGGCATCAGGTCCCCCAGTGCAAAAGACCTCCTGGTTGAATTGCTGTGGATTGTTCGAAGTGCTAGGCTCCAGCAGATAA 2010 0.4184 MLEIGPHYGPVKSYISLSRQNSLPGFMKKWLELPFSNGASPSLNAFAAGQASGYKMFQTIKRKPKIDAYDTNGVVLEDIEGDIELKDVYFRYPARPDVQKALVKLKMEKKSETDKATTSHIDRNMASSENPKSSLRSISRGVDELGKTKSANVKRQEVSLIQISWFDDPANSSGAVGAKLSTDASSVRGLVGDTLALIVQNIKTVITGLLITFIANWRLSLVVLAVSPLILLQGVFQERFLKGFSADAKLMSEEASKVANDAVCSIRTVASFCAEPKVTEMCGKKCEGPEKQGIRLGLVSGTGYGFSFFALYCTNALCFYVFFSLTITAIGVSQTSSMAPDRNKAKDSTASIFEILDSKPNTDFSSDESVASYSVKSDIELRNVSFKYPTRPDVQIFRDLNLTIPSGKTPIMPSASKRRKAAKKKKVKEANINPLSDGQQDMLGSDDLKSQDERGSDAGEVSDFESVGLVKTKEDTEESNRGNKSADATSTYGSPSEKDSDFKSCNSILEPTTSEYLGKYSDPAPAQMTLVTENTPYKETDNSVKPESSVPKEKSSVTESSLLGKSPVAKVGAADLGMKRNDDKVGPFSDENARVLSLEEPKQKEYDSNLPNSSYGSPIPESSNAIEHAKDSEIPECSEDQPLVASGPPVQKTSWLNCCGLFEVLGSSR 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0916 669 SUPERFAMILY ABC transporter transmembrane region 163 363 IPR036640 GO:0005524|GO:0016020
Lele13g0916 669 Gene3D ABC transporter type 1, transmembrane domain 38 72 IPR036640 GO:0005524|GO:0016020
Lele13g0916 669 Gene3D ABC transporter type 1, transmembrane domain 162 320 IPR036640 GO:0005524|GO:0016020
Lele13g0916 669 Gene3D ABC transporter type 1, transmembrane domain 321 368 IPR036640 GO:0005524|GO:0016020
Lele13g0916 669 MobiDBLite consensus disorder prediction 408 652 - -
Lele13g0916 669 MobiDBLite consensus disorder prediction 607 621 - -
Lele13g0916 669 MobiDBLite consensus disorder prediction 483 514 - -
Lele13g0916 669 MobiDBLite consensus disorder prediction 446 460 - -
Lele13g0916 669 MobiDBLite consensus disorder prediction 527 563 - -
Lele13g0916 669 PANTHER ABC TRANSPORTER B FAMILY 38 99 - -
Lele13g0916 669 MobiDBLite consensus disorder prediction 113 135 - -
Lele13g0916 669 MobiDBLite consensus disorder prediction 576 606 - -
Lele13g0916 669 MobiDBLite consensus disorder prediction 467 482 - -
Lele13g0916 669 Pfam ABC transporter transmembrane region 162 327 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele13g0916 669 CDD ABC_6TM_Pgp_ABCB1_D2_like 155 360 - -
Lele13g0916 669 Gene3D - 369 409 IPR027417 -
Lele13g0916 669 Gene3D - 73 99 IPR027417 -
Lele13g0916 669 MobiDBLite consensus disorder prediction 120 135 - -
Lele13g0916 669 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 163 321 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0916 Lele-ChrLele13 20535690 20542975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0916 147 454 Calmodulin-binding Proteins AT2G36910 29.052 1.47e-33 136