LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele13g0893	ATGGTGGACGATCCTTCCACAGATTCGATTGTTTCTTGGAGTGCCACTAACAAAAGTTTCATAGTATGGAATCCACCAGAGTTTGCAAGTGTGTTGCTGCGAAGATTCTTTAAGCACAATAACTTCTCTAGTTTCATCAGACAGCTGAACACATATGGTTTTAGGAAAGTTGATCCAGAACAATGGGAATTTGCAAATGATGATCTCATACGAGAAACCCTGTATAGAAAACGAAGATTGCCAAGAGGTGGTTACTTTTGTGATGAAGCTGTAATTGAAGATGCTACAGAATCTTCCTCAATGATACCTCGAGATAATGCCGATATAACTTCTGTTCTGTCATCAAATGTGGAGCGACTGGAACAGTTGGAATCATTGCAGTTATTCTATGAGAACGTTGCTCATGATTTTAGTGATTCCTTTGTTCATAGCCATTCAAATATGGATCTTGATGAATCTGCAAGTCGTTCTGATAGTCCTGCTCTCTCTTGTATGCAACTTGATGACGAACTTCACCCTATGTCATCTGGAATTGACATGAACTCTGAGCCAGCTGGAGCTACCGTTGTTGATCCTGGTTCATCAAAAGAAAAACATGTGGGAACGACCACTCTAGCAGCTGGTGTCAATGATGTATTCTGGGAACAGTTCTTGACTGAGAATCCTGAAATTGCTTCTAGGTTTTACCAAACGAAACATGATGCGTGGAAAACAGGGTTAGCTTCTGTCGTTTTATTGTCTGTTGGGTCGTTTTGGGGGTCTGATGCTGACTTGGTGCTTTAA	783	0.41	MVDDPSTDSIVSWSATNKSFIVWNPPEFASVLLRRFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANDDLIRETLYRKRRLPRGGYFCDEAVIEDATESSSMIPRDNADITSVLSSNVERLEQLESLQLFYENVAHDFSDSFVHSHSNMDLDESASRSDSPALSCMQLDDELHPMSSGIDMNSEPAGATVVDPGSSKEKHVGTTTLAAGVNDVFWEQFLTENPEIASRFYQTKHDAWKTGLASVVLLSVGSFWGSDADLVL	260

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele13g0893	260	Pfam	HSF-type DNA-binding	1	72	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lele13g0893	260	ProSitePatterns	HSF-type DNA-binding domain signature.	33	57	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lele13g0893	260	SUPERFAMILY	"Winged helix" DNA-binding domain	1	67	IPR036390	-
	Lele13g0893	260	FunFam	Heat stress transcription factor B-4	1	81	-	-
	Lele13g0893	260	SMART	hsfneu3	1	77	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lele13g0893	260	Gene3D	-	1	82	IPR036388	-
	Lele13g0893	260	PRINTS	Heat shock factor (HSF) domain signature	32	44	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lele13g0893	260	PRINTS	Heat shock factor (HSF) domain signature	45	57	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lele13g0893	260	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	1	148	IPR027725	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele13g0893	Lele-ChrLele13	20394685	20397253	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele13g0893	1	82	HSF	AT4G17750	64.634	1.15e-33	125

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Lele13g0893		HSF_DNA-bind	3.6e-22	CL0123