Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0891 ATGGCTTTGGGGGCTATATTTTCGTCCCTGCGGCGCCGGAGGTCGCCGTCGGTCGAAGCCTTTATCGCTCCGGTTGACCTGACAGATGTTGCCTTGGTCCAAACGATCGTGTCCGTGGCTAGCGAGCTCGTCTCTTGCTTCTCTGGGCGTTCGTTCTTCTTTCAACGCAAGAATTCGCGGGCGCTTATCCGCAAGGTCGAGATGTTTCAGTTGCTTCTGGAGTATCTACGGGATAGCGGAACGAATATTCCGATGACAGGGTTGGTTTGTCTTGAGGAGCTCTATCTTGTTCTGTATCGGTCCAAGATTCTGCTTGATTATTGCGCGCAGTCGAGTAAGTTATGGCTTTTGCTTCAGAACCATTCAGTTTCTGGTCATTTCCATGATTTGAATAAAGAAATTTCGACTCTTTTGGATGTATTCCCGTTTAAGGATGTTCAATTGAGTGAGGATATTAGAGAACAGATTGAGCTATTGCAGAAACAATCGAGGAGAGCTAAGTTGTTTATTGACAAGAAAGACGATGAGCTCCGAACTGAGTTCTTGTCATATCTCCACGAATTTGAGAATGGACGAGTTCCTGATTCAGCAGGGCTTCGATCGTTTTTTATGAAGGAATTGCAGATTCTGGATGCTAGGAGTTGTAGAGCAGAAATTGAGTCGTTGGAGGAACAGATTATTAACCACGAAGGAGATGATGAGCCTACCATTTCTGTGCTCAATGGTTTGGTTGCATTGACACGGTATTCTAGATTTTTGCTCTTTGGATTTGAGGAAGATGAACTAGAATCAGAAAATGGAAGCCAGATGAAAAAACTGAAGACGAGATTGATTAATCAAGAAATTGCTGAAACATTTCTAACTATTCCTAAGGACTTTAACTGCCCAATATCGTTGGATTTGATGAGAGACCCAGTGATAATCGCCACAGGACAAACATATGATAGAAGCTCCATATCAAGGTGGTTGGAAGAAGGGCATTGTACTTGTCCAAAAACAGGACAAATGCTTTCTCACACAAAGCTTGTCCCGAATCGAGCTCTGAAGAATTTGATCATGAAGTTCGTCACTGCACATGGAATCCCTCATGACTCACTGGAGGCTGTAGATGTAGTACCGGATGCCTTTTCAATGGCTTCTCCGTCGAAAGCTGCACTCGAAGCCAACCGGGCAACGGTAGTGCTTCTGATTCAGCAGCTGGAGAATGGATCTCAAGCTGCAGAGACTATAGCTGCCCGGGAGATACGATTGCTTGCGAAAACAGGCAAGGAAAATCGCGCGTTCATCGCGGAAGCCGGGGCGATTCCTCGACTTTGTAAACTACTTTCATCTCCTAATTCCATTGCTCAGGAGAATTCAGTGACAGCATTGCTCAACCTGTCAATATATGAGAAGAACAAGAGTCGTATCATCGATGAAGAAGGTTGTCTGGAATCCATAGTTGATGTCTTGAGATTAGGTCACACAACAGAGGCAAGAGAGAATGCTGCTGCAACATTGTTCAGCCTCTCAGCAGTCCATGCATATAAGAAGAGAATCGCAGATGAGGCAGGAGCAATCGAAGCACTTGCACGGCTTTTGCAAGAGGGAAACTTGAGAGGAAAGAAAGATGCAGTAACAGCCTTATTCAATCTTTCCACCCACACAGATAACTGTATCAAAATGATTGAAGCCGGAGCAATAACGGCTCTTGTTGGGGCTCTGCGTACCGAAGGAGTGGCTGAGGAAGCAGCAGGCGCTCTTGCCTTGATTGTCCGGCAACCTATCGGAGCCAAGGCAGTGGTGAAGGAGGAAGAAGCGGTGGCCGGGTTGATGGGAATGATGCGTTGTGGAACCGCACGGGGGAAAGAGAACGCGGTGGCAGCATTGCTGGAGCTGTGCCGGAGTGGAGGCGCAGCAGCAACCGAGAGGGTGGTGAGGGCACCGGCTTTAGCCGGATTGCTGCAAACCCTACTTTTTACGGGAACAAAAAGAGCTAGAAGGAAAGCAGCTTCACTTGCCAGAGTGTTTCAGAGATGTGAAAATGCATCTCTACATTATGGTGGACTAGGTGTAGGATATTCATATGCTAGCAATTCAGCTACCGGTAGAGATACAACGTTTGCAGGGGATGTTTCAGTACCAATGTCTATTTCTGTCCCTCTCTTGTAA 2151 0.4663 MALGAIFSSLRRRRSPSVEAFIAPVDLTDVALVQTIVSVASELVSCFSGRSFFFQRKNSRALIRKVEMFQLLLEYLRDSGTNIPMTGLVCLEELYLVLYRSKILLDYCAQSSKLWLLLQNHSVSGHFHDLNKEISTLLDVFPFKDVQLSEDIREQIELLQKQSRRAKLFIDKKDDELRTEFLSYLHEFENGRVPDSAGLRSFFMKELQILDARSCRAEIESLEEQIINHEGDDEPTISVLNGLVALTRYSRFLLFGFEEDELESENGSQMKKLKTRLINQEIAETFLTIPKDFNCPISLDLMRDPVIIATGQTYDRSSISRWLEEGHCTCPKTGQMLSHTKLVPNRALKNLIMKFVTAHGIPHDSLEAVDVVPDAFSMASPSKAALEANRATVVLLIQQLENGSQAAETIAAREIRLLAKTGKENRAFIAEAGAIPRLCKLLSSPNSIAQENSVTALLNLSIYEKNKSRIIDEEGCLESIVDVLRLGHTTEARENAAATLFSLSAVHAYKKRIADEAGAIEALARLLQEGNLRGKKDAVTALFNLSTHTDNCIKMIEAGAITALVGALRTEGVAEEAAGALALIVRQPIGAKAVVKEEEAVAGLMGMMRCGTARGKENAVAALLELCRSGGAAATERVVRAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYSYASNSATGRDTTFAGDVSVPMSISVPLL 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0891 716 FunFam RING-type E3 ubiquitin transferase 288 363 - -
Lele13g0891 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 363 IPR013083 -
Lele13g0891 716 ProSiteProfiles U-box domain profile. 288 362 IPR003613 GO:0004842|GO:0016567
Lele13g0891 716 Gene3D - 27 144 IPR036537 GO:0007166
Lele13g0891 716 SMART arm_5 463 505 IPR000225 GO:0005515
Lele13g0891 716 SMART arm_5 422 462 IPR000225 GO:0005515
Lele13g0891 716 SMART arm_5 548 586 IPR000225 GO:0005515
Lele13g0891 716 SMART arm_5 507 547 IPR000225 GO:0005515
Lele13g0891 716 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 433 475 IPR000225 GO:0005515
Lele13g0891 716 Pfam Armadillo/beta-catenin-like repeat 423 461 IPR000225 GO:0005515
Lele13g0891 716 Pfam Armadillo/beta-catenin-like repeat 516 546 IPR000225 GO:0005515
Lele13g0891 716 SUPERFAMILY ARM repeat 393 670 IPR016024 -
Lele13g0891 716 Gene3D - 518 672 IPR011989 -
Lele13g0891 716 SUPERFAMILY RING/U-box 277 362 - -
Lele13g0891 716 Gene3D - 392 517 IPR011989 -
Lele13g0891 716 PANTHER U BOX DOMAIN-CONTAINING 63 673 - -
Lele13g0891 716 SMART Ubox_2 292 355 IPR003613 GO:0004842|GO:0016567
Lele13g0891 716 FunFam RING-type E3 ubiquitin transferase 365 686 - -
Lele13g0891 716 CDD RING-Ubox_PUB 293 335 IPR045210 -
Lele13g0891 716 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 518 560 IPR000225 GO:0005515
Lele13g0891 716 Coils Coil 212 232 - -
Lele13g0891 716 Pfam U-box domain 289 359 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0891 Lele-ChrLele13 20387175 20389325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0891 1 716 U-box Gene Family AT1G29340 67.575 0.0 927