Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0885 ATGGAGCGTAGGTTAAACAACAGAAACCTAACTATCAGTGAACATGATGACACTGATGTAGCTCAAGAAAACGTTGCAGAGTCCCCTCCTTCCGCTGTCTTCAATATTGATAGCTTCGTCCCTTCTACGTCTTCTCCCAAACGAAGGCGAGCCATACAGAAGAGGGTAGTGCAAATTCCAATCAAGGATGTAGAAGGATCTCGGCTTAAAGGAGAGAGCAATACTCCGCCGTCTGATTCCTGGGCCTGGAGAAAGTACGGACAAAAACCCATCAAAGGTTCGCCTTACCCCAGAGGATATTACCGATGCAGCAGTTCAAAGGGATGCCCCGCAAGAAAACAAGTGGAAAGGAGCCGCGTGGACCCTACCATGATCGTCGTTACCTACTCTTGCGAGCACAATCACCCTTGGCCGGCTCCTCGTAATCATCATCACCACAAATCCGCCTCCAACAGAGCCATCGCCCAAACAGAACCCGTCGCAGCCCGGCTTGAGCAGGAACAGGAGCCAGAGCCGGAGTCTGAGGAGAAGTTCGGGGAGCTCGGGGACGGGTCACTGATGAGCACGGCGGACGAGTTGGGTTGGTTCGGCGAGATGGAGAGGACGGCCACGACGTCGTCGGCTGTTCTGGAGAGCACAATTCTGACAGGGGACGACACGGACGTGGCGTCAATGTTCTTGCCGATGAGGGGAGAGGACGAGTCACTGTTCGCGGACCTGGGGGAGCTGCCGGAGTGCTCGGTGGTGTTCCGGCGAGTGGGGATGGAAAGGGAGGAGGAGAGGCGGCGGTGTGCGTCGCCGTGGTGTGGGACCACAAGTTGA 822 0.5596 MERRLNNRNLTISEHDDTDVAQENVAESPPSAVFNIDSFVPSTSSPKRRRAIQKRVVQIPIKDVEGSRLKGESNTPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTMIVVTYSCEHNHPWPAPRNHHHHKSASNRAIAQTEPVAARLEQEQEPEPESEEKFGELGDGSLMSTADELGWFGEMERTATTSSAVLESTILTGDDTDVASMFLPMRGEDESLFADLGELPECSVVFRRVGMEREEERRRCASPWCGTTS 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0885 273 Gene3D WRKY domain 67 139 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele13g0885 273 MobiDBLite consensus disorder prediction 164 180 - -
Lele13g0885 273 FunFam WRKY transcription factor 65 58 138 - -
Lele13g0885 273 SUPERFAMILY WRKY DNA-binding domain 75 138 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele13g0885 273 MobiDBLite consensus disorder prediction 1 28 - -
Lele13g0885 273 SMART WRKY_cls 77 137 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele13g0885 273 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 24 248 IPR044810 GO:0003700
Lele13g0885 273 MobiDBLite consensus disorder prediction 1 22 - -
Lele13g0885 273 Pfam WRKY DNA -binding domain 79 136 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele13g0885 273 ProSiteProfiles WRKY domain profile. 78 138 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele13g0885 273 MobiDBLite consensus disorder prediction 164 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0885 Lele-ChrLele13 20342676 20343980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0885 15 251 WRKY Transcription Factor Family AT1G29280 55.285 8.29e-81 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele13g0885 WRKY 2.8e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0885 13 20342676 20343980 Lele15g1590 15 9426315 9427610 hybridization
Lele13g0885 13 20342676 20343980 Lele16g1616 16 9389511 9390855 hybridization