Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0875 ATGGATCAGGCAAGAAAGCCAGAAAGTGATGAGGTATCGGATCTCGTTGATGAAGGGGCAGGAAAGAAAACGAGTCATTCGGTTGAAGGGTCTGCTGATGCAGTAGCTGGGGACCGCTTCAGTGGAGCTATCCTAAGTGGAGATGTGCCTTCTGAAGAGATGAGTAATGATGAGGGATCGAATAAGAAACTACATGAGGCGCCTGCAGAAGCTATGGATCAAGGCATGCGTGATCAGCAAAATACCAGTGACACATTGCACTTAGTTGATCAGGGAACAAGTTATAATTCAAGGAATTTGCATAATAGTGCTGTACTTGAGACCGTGGTTGTAATAGATTCTGTTGAGACAGAGTGTGTGAATGGAGATAAGAGGAAGTTGGAAGCGAAGGTCAATGACTCGGGGTTGAACAAGGCATCCATGAAATCACCTAAAAGGCCGTCTCAAGCGGATAAAAATTCATGCGTGATCAATATAAAGTCTGGTAGCTGCAGAGAGTTTAGCGAGAATGAGGAGGGTGAAAGGATTTGTAGGATTTGCCATCTGGCTTCTGGGCAACCATCAGATTCAGCAGCTGCTAGCCCTACAAACAGTGCTTCTACTGGAGATTTAATTCAGCTTGGTTGTGCATGTAAAGACGAGCTGGGTATTGCGCACAGTCATTGTGCCGAGGCATGGTTCAAGCTAAAAGGAAACAGGTTGTGTGAAATATGTGGTGAAACTGCCAAAAATGTTTCGGGTGTTGCCGATCATGGATTTATGGAAGAGTGGAATGAAAGAACATTTATTGACAACCGTAGCACCTCATCTGGCATGTGTTGTGGATGCTGGCGTGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTGGTAATAGCTTTTGTTCTGCCATGGTTTTTCCGTGTAAATATGTTCTGA 918 0.4477 MDQARKPESDEVSDLVDEGAGKKTSHSVEGSADAVAGDRFSGAILSGDVPSEEMSNDEGSNKKLHEAPAEAMDQGMRDQQNTSDTLHLVDQGTSYNSRNLHNSAVLETVVVIDSVETECVNGDKRKLEAKVNDSGLNKASMKSPKRPSQADKNSCVINIKSGSCREFSENEEGERICRICHLASGQPSDSAAASPTNSASTGDLIQLGCACKDELGIAHSHCAEAWFKLKGNRLCEICGETAKNVSGVADHGFMEEWNERTFIDNRSTSSGMCCGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0875 305 MobiDBLite consensus disorder prediction 1 24 - -
Lele13g0875 305 SUPERFAMILY RING/U-box 172 241 - -
Lele13g0875 305 MobiDBLite consensus disorder prediction 136 152 - -
Lele13g0875 305 MobiDBLite consensus disorder prediction 1 62 - -
Lele13g0875 305 PANTHER ZINC FINGER, RING-CH-TYPE 63 305 - -
Lele13g0875 305 MobiDBLite consensus disorder prediction 131 152 - -
Lele13g0875 305 ProSiteProfiles Zinc finger RING-CH-type profile. 169 245 IPR011016 GO:0008270
Lele13g0875 305 Pfam RING-variant domain 177 238 IPR011016 GO:0008270
Lele13g0875 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 249 IPR013083 -
Lele13g0875 305 SMART ringv_2 176 239 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0875 Lele-ChrLele13 20291244 20294578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0875 141 304 C3H Transcription Factor Family AT5G05830 38.462 3.59e-31 114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0875 13 20291244 20294578 Lele13g0875 13 20291244 20294578 ECH
Lele13g0875 13 20291244 20294578 Lele15g1602 15 9495085 9498422 hybridization
Lele13g0875 13 20291244 20294578 Lele16g1632 16 9458192 9461887 hybridization