LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele13g0872	ATGGCCGACGATAAGGAGATGTCTGCCTCTGTCAATGGGAATGAGTCACTCACCGGACACATCATATCTACAACAATAGGAGGCAAAAATGGGGAGTCCAAACAGACTATTAGTTACATGGCAGAACGTGTTGTGGGAACTGGATCATTTGGGATTGTTTTCCAGGCAAAATGCTTAGAAACTGGTGAAGCAGTGGCCATTAAGAAGGTTTTACAGGACAGAAGATACAAGAATCGTGAACTACAGTTAATGCGAGTCATGGACCATCCAAATGTGATCTCCTTGAAGCATTGCTTCTTTTCCACTACAAGTACAAATGAGCTATATCTGAATCTGGTGATGGAATATGTTCCCCAGAGCCTGTATCAGGTCATAATGCATTATAGCAATGCTAATCAGAGAATGCCACTTATTTATGTAAAACTTTATATGTACCAGATTTTCAGGGGTTTGGCTTATATCCACACTGTTCCAGGAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTGGTTGATACTCATACACACCAGGTTAAGCTATGTGATTTTGGAAGCGCAAAAATGCTGGTCAGAGGGGAAACTAATATATCATACATATGTTCACGCTTCTATCGAGCTCCAGAACTTATATTTGGTGCCACAGAGTATACTACCTCAATTGACATTTGGTCAGCTGGCTGTGTTCTAGCTGAACTTCTATTAGGCCGGCCATTGTTTCCTGGCGGAAGTGCAGTAGACCAGCTTGTGGAGATTATAAAGGTTCTTGGAACACCCACTCGGGAGGAAGTCCGTTGTATGAATCCCAATTACAATGATTTTAGGTTCCCCCAGCAAAAAGCATGCCCATGGCATAAGATATTCCACAAAAGGATGCCTCCTGAAGCAATTGATCTTGTTTCCCGGCTTCTGCAGTACTCCCCAAGTCTTCGTTGCACTGCGCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGAGAACCTAATGCTCGCCTGCCAAATGGGCGTCCATTTCCAGTATTATTGAACTTTGGACAGGAATTGTCTGGAGCATCTCCAGAACTTGTTAATAAGTTGATACCAGACCATGTGAAGCGGCAAATAGGGCTACAATTCGAGCATCTGACAGGAACATTATGA	1143	0.4304	MADDKEMSASVNGNESLTGHIISTTIGGKNGESKQTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTSTNELYLNLVMEYVPQSLYQVIMHYSNANQRMPLIYVKLYMYQIFRGLAYIHTVPGVCHRDLKPQNILVDTHTHQVKLCDFGSAKMLVRGETNISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGRPLFPGGSAVDQLVEIIKVLGTPTREEVRCMNPNYNDFRFPQQKACPWHKIFHKRMPPEAIDLVSRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPFPVLLNFGQELSGASPELVNKLIPDHVKRQIGLQFEHLTGTL	380

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele13g0872	380	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	160	172	IPR008271	GO:0004672\|GO:0006468
	Lele13g0872	380	FunFam	Shaggy-related protein kinase kappa	119	366	-	-
	Lele13g0872	380	Gene3D	Transferase(Phosphotransferase) domain 1	119	366	-	-
	Lele13g0872	380	ProSitePatterns	Protein kinases ATP-binding region signature.	45	69	IPR017441	GO:0005524
	Lele13g0872	380	FunFam	Glycogen synthase kinase-3 beta	23	118	-	-
	Lele13g0872	380	SUPERFAMILY	Protein kinase-like (PK-like)	38	346	IPR011009	-
	Lele13g0872	380	Pfam	Protein kinase domain	39	323	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele13g0872	380	Gene3D	Phosphorylase Kinase; domain 1	24	118	-	-
	Lele13g0872	380	SMART	serkin_6	39	323	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele13g0872	380	ProSiteProfiles	Protein kinase domain profile.	39	323	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele13g0872	380	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	9	368	-	-
	Lele13g0872	380	CDD	STKc_GSK3	34	326	IPR039192	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele13g0872	Lele-ChrLele13	20278935	20282250	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele13g0872	45	326	Core Cell Cycle Gene Families	AT3G48750	35.395	2.00e-57	187

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Lele13g0872		Pkinase	5.3e-66	CL0016