Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0862 ATGGCTTTGTTAAAGTTCCGGGCTAGAATAGATTCTGATCCTCATGGAGCTTTGGCTAACTGGAAACCGGATGATCTTGATCCTTGTAACTGGTTTGGTGTTCAATGCGTTGACAATACAGCACAAACGCTGAACTTAAGTGGGCTATCTTTGGAAGGTACACTGGCTCCTGAGCTTGGGAAACTAAGTAACTTAAAATATCTTGTATTATGCAAAAATAAGTTTTCTGGCACTATTCCTAAAGAGCTTGGAGATCTAACTAAGCTGGAGTTGTTGGATTTGAGGGACAACAGCTTGACTGGAAGTGTTCCAACAGAAATTGGCGGGATGTTGTTCCTAAAAGACTTGTTCCTTTTTGGCAACAACATGGAAGACAATGTTCCTCGAGATCATGGGAAGCTTGAATTACTCTCTAAACCACAATTGGTTGACAATCATACACCTCATCATACAGCTGGAATTTGTTGCATGAATAGAAAACTTGGACACTGTGTGTGGCCGGGCAATTTCAAACCATGGAACATGAGACAATCTCTTGTCATTTCAATTAAAGGGGCAATTACTAAATACATCAATTCCGTGATGTTGCCATTGGGTGTACATAACTCTGTTCCCATTAGGTTCAAGCTACAGAACTACCATAATGATGAAGAGAACCGCTTTGACAATCAGCCTAGTGAGTCAGCAATTGCTGTAATGCGTCGTAAATTACTTGATCAGTCCAGTAACCTTGCAGCTGTACCTTTTAGTGGTGGGTCTACAAAACAAATCATTAGTCTCCCAACTACACTGAGCAGTGGAGCTTTTCCAGCAACATTAAATACCAATAAGAATCAAAATCAGTTACCTGCGCCATTACCTTCACCTGCTTCCTCTGAAAGTGAAACAAATCAACAACCTTCAGCTAAAGATGAAGCTTCTGAAGTTTCTTGGAAGTACATAATTATTATATTAGGTGTGCTTGTGTTGGTCTTTGTTGTTGTTGCCATATGTTGCCTGTGGAATAAGAGAGCAGTGAAAGTAATTAGGCCATGGAAGACAGGATTAAGCGGACAATTACAGAAAGCTTTTGTGACAGGTGTCCCTAAGTTAAATCGATCAGAGTTGGAGGTAGCTTGTGAGGATTTCAGCAATATTGTTGTAAGCTTGCCTCATTGCACCATATACAAGGGAACTCTATCCAGTGGAGTCGAGATTGCTGTTGCATCAATTCTGGTAACTTCTGCCCAAGAATGGTCAAAGAATATGGAGCTTGCCTATCGAAAAAAGATTGATTCCTTGTCTCGGATAAATCATAAGAACTTTATCAATCTTATTGGCTACTGTGAGGAAGAAGAGCCATTTACTAGGATGATGGTGACTGAGTATGCTCCAAATGGAACCCTATTTGAGCATTTGCATGTTGACGGGGTTGAACACCTTGATTGGAATGCTAGAATGAGGGTTATTATGGGCGTAGCTTATTGTCTTCAGTACATGCACCATGACCTGAATCCACCAATAGCTCAGGATGGCCTCAATTCACAATTAGTCTTGTTAACAGATGATTTTGCTGCAAAGATTTGCCAGCTCTTATTTATCCCATCAAATGAAGATAAATCAAATTCAAAGAATTCTGAATTGCCATTAAATGTTGATCCTGAGACGAACATTTATTGCTTTGGAAAATTGCTCTTTGAAATCATTTCTGGGAAATTACCAGACTGTGAAGAACAAGGACAACTTGAGAAATTGGCTGCTGAATTGTCAAATGGTAAGAGAAGCATCAGTTATATGATCGATCCTTGCCTTGAATCCTTCAAAGAGAAAGAACTTGAAGTGGTTTGTGAGGTGATCCATGAATGTACCCAACCTAATCCAAGTTTGAGACCCACAATAAAGGACATAACCTCCAAATTAAGGGATGTTATTGGTATATCACCTGACCAAGCAGCCCCAAGACTTTCTCCACTCTGGTGGGCTGAACTAGAGATCTTGTCAGAAGAGGCAACATAA 1995 0.4015 MALLKFRARIDSDPHGALANWKPDDLDPCNWFGVQCVDNTAQTLNLSGLSLEGTLAPELGKLSNLKYLVLCKNKFSGTIPKELGDLTKLELLDLRDNSLTGSVPTEIGGMLFLKDLFLFGNNMEDNVPRDHGKLELLSKPQLVDNHTPHHTAGICCMNRKLGHCVWPGNFKPWNMRQSLVISIKGAITKYINSVMLPLGVHNSVPIRFKLQNYHNDEENRFDNQPSESAIAVMRRKLLDQSSNLAAVPFSGGSTKQIISLPTTLSSGAFPATLNTNKNQNQLPAPLPSPASSESETNQQPSAKDEASEVSWKYIIIILGVLVLVFVVVAICCLWNKRAVKVIRPWKTGLSGQLQKAFVTGVPKLNRSELEVACEDFSNIVVSLPHCTIYKGTLSSGVEIAVASILVTSAQEWSKNMELAYRKKIDSLSRINHKNFINLIGYCEEEEPFTRMMVTEYAPNGTLFEHLHVDGVEHLDWNARMRVIMGVAYCLQYMHHDLNPPIAQDGLNSQLVLLTDDFAAKICQLLFIPSNEDKSNSKNSELPLNVDPETNIYCFGKLLFEIISGKLPDCEEQGQLEKLAAELSNGKRSISYMIDPCLESFKEKELEVVCEVIHECTQPNPSLRPTIKDITSKLRDVIGISPDQAAPRLSPLWWAELEILSEEAT 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0862 664 FunFam Nuclear pore complex protein NUP107 1 150 - -
Lele13g0862 664 ProSiteProfiles Protein kinase domain profile. 339 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g0862 664 MobiDBLite consensus disorder prediction 276 303 - -
Lele13g0862 664 Gene3D Phosphorylase Kinase; domain 1 346 456 - -
Lele13g0862 664 PANTHER PROTEIN MALE DISCOVERER 2 1 661 - -
Lele13g0862 664 FunFam Inactive receptor-like serine/threonine-protein kinase 348 456 - -
Lele13g0862 664 Gene3D Transferase(Phosphotransferase) domain 1 457 642 - -
Lele13g0862 664 Pfam Protein tyrosine and serine/threonine kinase 387 633 IPR001245 GO:0004672|GO:0006468
Lele13g0862 664 SUPERFAMILY L domain-like 7 161 - -
Lele13g0862 664 Pfam Leucine rich repeat 63 122 IPR001611 GO:0005515
Lele13g0862 664 Gene3D Ribonuclease Inhibitor 1 179 IPR032675 -
Lele13g0862 664 Pfam Leucine rich repeat N-terminal domain 2 36 IPR013210 -
Lele13g0862 664 SUPERFAMILY Protein kinase-like (PK-like) 386 632 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0862 Lele-ChrLele13 20203973 20209121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0862 44 644 Receptor kinase-like Gene Family AT5G56040 25.669 1.98e-37 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Lele13g0862 PK_Tyr_Ser-Thr 2.8e-15 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0862 13 20203973 20209121 Lele13g0862 13 20203973 20209121 ECH
Lele13g0862 13 20203973 20209121 Lele14g0760 14 18594516 18599386 ECH
Lele13g0862 13 20203973 20209121 Lele15g1615 15 9589275 9596146 hybridization
Lele13g0862 13 20203973 20209121 Lele16g1645 16 9542608 9549558 hybridization