Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0845 ATGTCGTCAACTCCTACATCTTCTTCTTCTTCTTCTAATCGGGTGCTGTCTTCCATAAAATTTCATGTCCTTGCTCGCATCAAAAGGTTTATCAAACCCAAAGCGACCCGAGTAAGATCTGATTCATCTGATCAACTCGACATATCAATTACCAAAGCCGACAGCAACATCGACAAGGCTGAGAATTGTGAATTAGAGACGCAAGCTATGGAGAAACAGAGTTGTAAGGAGGAGGAGGAGGAATCTATGATATCGTTGAAGAGGTGTGTGAAGAAGCTTCACTTCGGGAGCTGGGAAGAGAAGGAGATAACGGCGAAAGAGATTGAACGCTTAGCCAAAGAAGATGTCAGGGTAAAAAAGCTGACAACAGAGCTCGGAGTGGTGCCGGAGCTGGTGTCAATGGTTGCGTCGGAGGTGCCTGGCCGGCGGCTAGCAGGGCTAAAGGCGTTGGTCCAGCTCGCTCATGGAAGTTACAAAAACAAGGCTTTGATAGTGGAGGCAGGTATATTCCCCAAGCTGCCAAAGAGATTCGGCCTTGTAGATGAATCAACAAGAAGGGAATGTGCAGGGCTGCTCTTCTCATTGTCATCACTAGCCAACAGCCAATTCCCTATTGCTTCATCAGATTTTCTCCCATTCATTAAAGACATTGTGGAATCAGATTCAAATGTTGAAACCAAGCAATCATGCCTGGGTGCCTTGTGCAACCTCTCAACTGTGTTAGAGAATGTAGGGCCTTTAATTTCTGCTGGGATTGTGCCAATCCTCTTAGAACTGTCCTCCATTAAAGGCAATTCAGAGAAAGCACTTGCTACTTTGGGGAACTTGGTGGTGACCTTGATGGGGAAGAAGGCAATAGAAAATAGCTTAATGATGCCAGAGAGCTTCATAGAGATTTTGACATGGGAGGATAAACCAAAATGCCAAGAATTGTCAGCTCATATTCTGATGATTCTGGCTCATCAGAGCTCATCACAAAGACAGAAGATGGCAAAAGCAGGGATCGTCCCTGTTCTGCTTGAAGTGGCTCTCTTGGGAAGCCAATTAGCTCAGAAGAGAGCACTAAAGCTACTGCAATGGTTCAAGGACGAGAGGCAATTAAAGATGGGGCCACATTCTGGGCCACAAACACCAAGAATGGCAACGGGTTCACCTGTAAACCAAATGGAGGCAAAAGAGGGGAAGAGAATGATGAAGGGCTTGGTGAAACAGAGTTTGCATAGGAACATGGAAATTATTACCCAGAGAGCCAATGCCTCTGGGGATCCTTCTAAGTTGAAATCATTGGTCATCAGCACAAGTTCCAAGAGTTTGCCTTACTAG 1323 0.4565 MSSTPTSSSSSSNRVLSSIKFHVLARIKRFIKPKATRVRSDSSDQLDISITKADSNIDKAENCELETQAMEKQSCKEEEEESMISLKRCVKKLHFGSWEEKEITAKEIERLAKEDVRVKKLTTELGVVPELVSMVASEVPGRRLAGLKALVQLAHGSYKNKALIVEAGIFPKLPKRFGLVDESTRRECAGLLFSLSSLANSQFPIASSDFLPFIKDIVESDSNVETKQSCLGALCNLSTVLENVGPLISAGIVPILLELSSIKGNSEKALATLGNLVVTLMGKKAIENSLMMPESFIEILTWEDKPKCQELSAHILMILAHQSSSQRQKMAKAGIVPVLLEVALLGSQLAQKRALKLLQWFKDERQLKMGPHSGPQTPRMATGSPVNQMEAKEGKRMMKGLVKQSLHRNMEIITQRANASGDPSKLKSLVISTSSKSLPY 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0845 440 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 10 440 - -
Lele13g0845 440 SMART arm_5 239 278 IPR000225 GO:0005515
Lele13g0845 440 SMART arm_5 157 197 IPR000225 GO:0005515
Lele13g0845 440 Gene3D - 83 292 IPR011989 -
Lele13g0845 440 Gene3D - 293 364 IPR011989 -
Lele13g0845 440 SUPERFAMILY ARM repeat 87 360 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0845 Lele-ChrLele13 20086366 20089020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0845 99 378 U-box Gene Family AT1G67530 28.571 3.64e-20 91.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0845 13 20086366 20089020 Lele13g0845 13 20086366 20089020 ECH
Lele13g0845 13 20086366 20089020 Lele15g1634 15 9706284 9708937 hybridization
Lele13g0845 13 20086366 20089020 Lele16g1662 16 9658225 9660708 hybridization