Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0843 ATGGATTTCTCCAAGAAGCGCAAAACCGAGGAGAACGGAACCGACGACTCCATGCCCTCAACTACACCCCTTGGCGCAGATGACATCCGCAGGATCCTCCAACCCTTCACGCAAGAACAGCTCATCGACCTGCTTCAAGCAGCTGCTCTTCATCACCCTGACGTTCTCGAGTCTATACGTTCCGTCGCCGATCGTGACTCCACCCTTCGGAAACTCTTTGTTCGGGGGCTTGCTGGGGAAACCACCACAGAGACACTCAGCAGTGTGTTCTCCTCCTTTGGACCGCTCGATGAGGCGATCGTTATCTTCGACAAAACGACCGGGAAGTCTAAAGGATACGGCTTTGTGACGTTTAAGCACGTTGATGGTTCCATATTGGCTTTGAAAGAGCCCAGCAAGAAAATTGACGGGAGAATGACGGTGACCCAGCTTGCCGCTGCTGGATTATCGGCCAGTCAAGGGACTAATGCGGCTGCTGCGGCCACAAGTGATGTTTCTACCAGAAAAATTTTCGTGGGCAATGTGCCGTTTGATATCTCGTCGGAGAGGCTGTTGAATTACTTTTTGGCATATGGGGAAATCGAAGAAGGGCCTCTTGGGTTTGACAAAGGTAATGGAAAGTCCAAAGGTTTCGCATTCTTTGTGTACAAAACGGAGGAGGGTGCTAGGGCTTCTCTTGTTGAGCCAGTCAAAATTATTGATGGGCATCAAGTGCTTTGTAAATTGGCCATGGATAACAAGAAGGGAAGATCAGGAGGAGCTCCCAACCAGGGCCCTCCTGGGTTACCAGGTAATGGCATGGCAGCACAACAGCCGCAACCATCTTTACCTGGCCCCATGATGGGATCAAATTACGGTGGTCATGGTTCTTCATATGGGGGATTTGGTGGTGCGCATCAGGGCCCCATGCAAGTGCCTGGTAATAATTATGGGTTGCAGTCTTCATTGCCGCAATATGGCACTCAGGAGGGGCTTATAGTGGTTCTCAGTTCAGTAGGCCAACTTCCGGTGATTATGGCGCTAGGCTGCCTCCAACTTCTGCTGGAATGCCTTCCGGAGGATATCCAGATGGTTCGCATTACAATTTGCCCTCATCTGCTGATCCCTCGCAGCATCAACAGCCCATGCAAATGCCAAGGCTGGCTCCCGGAGGAATGTACCAAGGCATGCCGCCCTACTACTGAGGTTTGTGATGGCTTGGGCGCTAATGCTTTAAATGGTTATGCTGATTTCGTGAATCCAGACAATGAATACTTTGGTTTTGATTACATGGACTGCTGTGAATTTGTTGGTGCTTCACTACCTCTGCTTCTATGTGTTGTTCCTATTTGTGATAGATTTTAG 1344 0.5 MDFSKKRKTEENGTDDSMPSTTPLGADDIRRILQPFTQEQLIDLLQAAALHHPDVLESIRSVADRDSTLRKLFVRGLAGETTTETLSSVFSSFGPLDEAIVIFDKTTGKSKGYGFVTFKHVDGSILALKEPSKKIDGRMTVTQLAAAGLSASQGTNAAAAATSDVSTRKIFVGNVPFDISSERLLNYFLAYGEIEEGPLGFDKGNGKSKGFAFFVYKTEEGARASLVEPVKIIDGHQVLCKLAMDNKKGRSGGAPNQGPPGLPGNGMAAQQPQPSLPGPMMGSNYGGHGSSYGGFGGAHQGPMQVPGNNYGLQSSLPQYGTQEGLIVVLSSVGQLPVIMALGCLQLLLECLPEDIQMVRITICPHLLIPRSINSPCKCQGWLPEECTKACRPTTEVCDGLGANALNGYADFVNPDNEYFGFDYMDCCEFVGASLPLLLCVVPICDRF 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0843 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 147 IPR000504 GO:0003723
Lele13g0843 447 Gene3D - 150 300 IPR012677 -
Lele13g0843 447 SMART rrm1_1 169 241 IPR000504 GO:0003723
Lele13g0843 447 SMART rrm1_1 71 143 IPR000504 GO:0003723
Lele13g0843 447 MobiDBLite consensus disorder prediction 1 25 - -
Lele13g0843 447 Gene3D - 61 149 IPR012677 -
Lele13g0843 447 SUPERFAMILY RNA-binding domain, RBD 60 145 IPR035979 GO:0003676
Lele13g0843 447 CDD RRM_RBM24_RBM38_like 70 145 - -
Lele13g0843 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 168 245 IPR000504 GO:0003723
Lele13g0843 447 CDD RRM_RBM24_RBM38_like 168 243 - -
Lele13g0843 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 170 227 IPR000504 GO:0003723
Lele13g0843 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 138 IPR000504 GO:0003723
Lele13g0843 447 SUPERFAMILY RNA-binding domain, RBD 161 264 IPR035979 GO:0003676
Lele13g0843 447 MobiDBLite consensus disorder prediction 246 277 - -
Lele13g0843 447 PANTHER GEO13361P1-RELATED 53 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0843 Lele-ChrLele13 20081594 20083423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0843 160 317 C2H2 Transcription Factor Family AT2G19380 32.298 7.78e-16 77.8