Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0829 ATGGGTTCTGCAGATGAGGACGATGATTCACTCGGTATTGGCATGAGGGTGATGATCGGCGTAGCTTTCACGTTATTCGCTATCGTCTTCTTCATAATCGTCTTCTACTTCTACATCAGACGCCTCAGACGAAGGCGTCAGCTGAGCCTGAGCAGACGCCTCGGAGATCCACAGGCGGTTTATCAAATCAGTGCTCAAGTTTTGCCGATTGATGTGGAATCACGTTCACCGAACGGCGACCGTCAGGGGCTTGACTCTTCCATCATAGCGTCGATTCCTAAGCTCTTGTACAAGCAAACAGACCAGTTCAACGGCAGTGAAGCCGTAGAGTGTTCGGTTTGCTTGGCCATTATTGTACAAGATGCACCCGTTAGGGTTTTGCCTAAGTGCAAGCATGTGTTTCATGTTGATTGTGTTGACACTTGGTTCGTTTCCAACACCACTTGCCCGATCTGCCGCACAGAAGTAGAACCCACAGTGACATCTGGCGGTGGCGCTGTTCAACCCACGGCACCGCCGGAATTAGAGAGTGGCGGGACGATCTAA 546 0.5092 MGSADEDDDSLGIGMRVMIGVAFTLFAIVFFIIVFYFYIRRLRRRRQLSLSRRLGDPQAVYQISAQVLPIDVESRSPNGDRQGLDSSIIASIPKLLYKQTDQFNGSEAVECSVCLAIIVQDAPVRVLPKCKHVFHVDCVDTWFVSNTTCPICRTEVEPTVTSGGGAVQPTAPPELESGGTI 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0829 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 159 IPR013083 -
Lele13g0829 181 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Lele13g0829 181 SUPERFAMILY RING/U-box 90 159 - -
Lele13g0829 181 Pfam Ring finger domain 110 153 IPR001841 -
Lele13g0829 181 FunFam E3 ubiquitin-protein ligase ATL6 72 159 - -
Lele13g0829 181 MobiDBLite consensus disorder prediction 161 181 - -
Lele13g0829 181 CDD mRING-H2-C3H2C2D_ZSWM2 110 153 - -
Lele13g0829 181 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 15 159 - -
Lele13g0829 181 SMART ring_2 111 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0829 Lele-ChrLele13 19990199 19990744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0829 13 158 C3H Transcription Factor Family AT2G42360 34.932 3.63e-27 100
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0829 13 19990199 19990744 Lele15g1649 15 9803530 9804075 hybridization
Lele13g0829 13 19990199 19990744 Lele16g1685 16 9766296 9768486 hybridization