Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0825 ATGCATTCCACTAAAGAAAACGTTGCAGAACAAGAAATACTGTGTGCCAAGCTTGAACAAAGTAACCTATTCAATGCAAGAATATTGCGCCAACTGGCCACCTTGAAGGCAAAACTGGGCTTAAAAACTGCATATGTTGATGTCTATAACTCCATGCTCAATGCTGTTTTGGATCCCAAAAAACACCGTTTGGAGGAAGGATCAAAGGGATGTTGTGGGACAGGGACAGTGGAATATGGGGAATCATGCAGAGGAATGGAAACATGTTCGGATCCAAGCAAATATGTATTCTGGGATGCTGTTCATCCCACAGAGATAATGTACAAGATTGTTGTGCTGATGCTGCTATTCATTCTGTCGCAAGAGAACTCGCTTCATAAGACATGTGAACAAGTTGGGTTACAAGTGTATCAATGCCACTACATCCCTGGTTTGCTTCGTGTACGGTTGTTTCCAAACATGGCTATTCATGGCAAGCAAGATTCAGCTTCTGAAGGAATTCTCGAGAACGTGTGGGCTAAAATCATTAACAGCAAGAATGGATCACAATGGGAAGAACTTCCTAATCTAGATGAAAGAGAAGGTTCTATGGAAGTTCTGAGAAGGCTTCCTAGTTTAGGAAGATGGATATCAATGGGAGCTGATTTCTGGGAAGAAATCTTAGATGGGTTTCCAGCTTGTAGCAGTAATGATTCAGGAATTTGCAGTCCTTTTGAATGCAATAAGAAGGTTGAAGAAGAAGCAGTGATATTGAAAGCAGATAAGAGGGTATCTGCAAAACATTACAGAGGAGTGAGAAGAAGGCCATGGGGGAAATATGCAGCAGAAATCAGAGACTCATCAAGGAAAGGTGCTAGGGTTTGGCTTGGGACGTTTGATACAGCTGAGGAAGCAGCTTTGGCTTATGATAAAGCTGCTTTGAGAATTAGAGGCCCCAAGGCATACCTGAATTTCCCACTTGAGACGGTTTCAAAGGCCTTAGGATCTGACCAGAAAGGAAATTACTGTCAAGAAAATTTCTGCAGTTCCGGAAAGAGAAGTACGTGCAGTGGGGAGAGAGATGAACTTGTTGGTGTGATGAATGAAGAACCTGCAAAGAAGAAAACGGCAAGCTTGGTGGGAAGGGTGATAGGGAATGAAGAAGATGCTGTTTTTGAGTTTCAGGACTTGGGAAGTGATTATTTGGAAAGTTTGTCATCTTCATTTCGATAG 1212 0.4233 MHSTKENVAEQEILCAKLEQSNLFNARILRQLATLKAKLGLKTAYVDVYNSMLNAVLDPKKHRLEEGSKGCCGTGTVEYGESCRGMETCSDPSKYVFWDAVHPTEIMYKIVVLMLLFILSQENSLHKTCEQVGLQVYQCHYIPGLLRVRLFPNMAIHGKQDSASEGILENVWAKIINSKNGSQWEELPNLDEREGSMEVLRRLPSLGRWISMGADFWEEILDGFPACSSNDSGICSPFECNKKVEEEAVILKADKRVSAKHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALRIRGPKAYLNFPLETVSKALGSDQKGNYCQENFCSSGKRSTCSGERDELVGVMNEEPAKKKTASLVGRVIGNEEDAVFEFQDLGSDYLESLSSSFR 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0825 403 CDD AP2 260 319 IPR001471 GO:0003700|GO:0006355
Lele13g0825 403 Pfam AP2 domain 261 311 IPR001471 GO:0003700|GO:0006355
Lele13g0825 403 PRINTS Ethylene responsive element binding protein signature 285 301 IPR001471 GO:0003700|GO:0006355
Lele13g0825 403 PRINTS Ethylene responsive element binding protein signature 262 273 IPR001471 GO:0003700|GO:0006355
Lele13g0825 403 FunFam Ethylene-responsive transcription factor 2 260 321 - -
Lele13g0825 403 Pfam GDSL-like Lipase/Acylhydrolase 21 111 IPR001087 GO:0016788
Lele13g0825 403 Coils Coil 1 21 - -
Lele13g0825 403 Gene3D SGNH hydrolase 11 125 IPR036514 -
Lele13g0825 403 ProSiteProfiles AP2/ERF domain profile. 261 319 IPR001471 GO:0003700|GO:0006355
Lele13g0825 403 SUPERFAMILY DNA-binding domain 261 321 IPR016177 GO:0003677
Lele13g0825 403 SMART rav1_2 261 325 IPR001471 GO:0003700|GO:0006355
Lele13g0825 403 PANTHER DNA-BINDING DOMAIN 252 394 IPR044808 GO:0003700|GO:0009873
Lele13g0825 403 Gene3D AP2/ERF domain 260 321 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0825 Lele-ChrLele13 19938958 19941601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0825 167 402 AP2-EREBP Transcription Factor Family AT4G18450 36.842 1.85e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele13g0825 Lipase_GDSL 1.9e-06 CL0264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0825 13 19938958 19941601 Lele13g0825 13 19938958 19941601 ECH
Lele13g0825 13 19938958 19941601 Lele15g1654 15 9838698 9839264 hybridization
Lele13g0825 13 19938958 19941601 Lele16g1691 16 9800155 9800697 hybridization