LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele13g0824	ATGGTTCTGGCCTCCCAGACAGATCTTCCTTTCAACGAAAACGACTCACAAGACATGTTCATATACCAAGTCCTTCACGAGGCCAACGGTCTTCAAACCACCGCTGCCACGTCCTCCTCCTCCTTCGCTGCCGAAAACGCCGCTGCATTCATCCAGCAGAGGCAACAAGCCACCGCACAGAACGGGCTAGAGCCGACCAGGACCGTCGGAAAGAAGCATTACAGAGGCGTAAGGCGACGGCCGTGGGGGAAGTACGCGGCGGAGATCCGAGACTCCGCCCGGCACGGAGCACGCGTGTGGCTGGGCACGTTCGAAACTGCCGAGGAGGCCGCCATGGCTTACGATCGAGCAGCTTTTAGAATGAGAGGCGCTAAAGCCTTGCTCAATTTTCCCGCGGAAATCGTAGCTTCTTCCTTGGACATGTCTCATGATTCTCACAAACCTAATCTGAGCTCCTCAGGAAGATCATTGTGTAATCAAGATTCAGATTCAAGTGCTGGCAGCAGCAGTTCCTGCGTTAATTCCATTGCAACAAATAGAGCCTTGTTAGAAAGCACAGACAGTTAG	567	0.5362	MVLASQTDLPFNENDSQDMFIYQVLHEANGLQTTAATSSSSFAAENAAAFIQQRQQATAQNGLEPTRTVGKKHYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAAMAYDRAAFRMRGAKALLNFPAEIVASSLDMSHDSHKPNLSSSGRSLCNQDSDSSAGSSSSCVNSIATNRALLESTDS	188

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele13g0824	188	ProSiteProfiles	AP2/ERF domain profile.	73	131	IPR001471	GO:0003700\|GO:0006355
	Lele13g0824	188	Pfam	AP2 domain	73	123	IPR001471	GO:0003700\|GO:0006355
	Lele13g0824	188	SUPERFAMILY	DNA-binding domain	73	133	IPR016177	GO:0003677
	Lele13g0824	188	MobiDBLite	consensus disorder prediction	142	172	-	-
	Lele13g0824	188	FunFam	Ethylene-responsive transcription factor 2	72	133	-	-
	Lele13g0824	188	Gene3D	AP2/ERF domain	72	133	IPR036955	GO:0003700\|GO:0006355
	Lele13g0824	188	PANTHER	DNA-BINDING DOMAIN	21	166	IPR044808	GO:0003700\|GO:0009873
	Lele13g0824	188	PRINTS	Ethylene responsive element binding protein signature	74	85	IPR001471	GO:0003700\|GO:0006355
	Lele13g0824	188	PRINTS	Ethylene responsive element binding protein signature	97	113	IPR001471	GO:0003700\|GO:0006355
	Lele13g0824	188	SMART	rav1_2	73	137	IPR001471	GO:0003700\|GO:0006355
	Lele13g0824	188	CDD	AP2	72	132	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele13g0824	Lele-ChrLele13	19936800	19937366	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele13g0824	9	134	AP2-EREBP Transcription Factor Family	AT5G47220	53.030	8.33e-42	139

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele13g0824		AP2	2.6e-15	CL0081