Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0811 ATGACATGGTGCAATGAGTCTCAAGATGAGGAAGGGATTCGAATTCAATTAAACAATCCCACAACCTCTGAAACTCGAATCACTTGCCCTTCATGCGGACATACCCTAGAATTTCAAGATCAGGGTGACATACTTAACCAATTGCCTGGGCTACCATCTGGGATGAAGTTTGATCCGAACGAGCAGGAGATATTACAACATTTGGAAGCGAAAGTTGAGTGTGATGTTCGCAAGCTTCATCCTCTTATTGATCAGTTCATTCCCACTATTGAAGGAGAAAATGGCATCTGTTATACACACCCAGAAAAGCTACCAGGAGTAAGCAAAGATGGGCAGATTCGGCACTTCTTCCACAGGCCATCAAAAGCATACACAACAGGAACAAGGAAAAGAAGAAAGGTTCACAGTTCAGACAACGAAGGAGGAGGAGGAGAAACAAGATGGCACAAGACAGGCAAAACAAGACCAGTCTTCATTAATGTTGAACTCAAGGGTTTCAAGAAGATACTTGTGCTTTACACAAACTATGGCAGAAAAAGGAAGCCGGAGAAGACGAGCTGGGTGATGCATCAGTACCACCTCGGAACAAACGAAGAAGAGAAAGAAGGACAACTCGTGTTGTCCAAGGTTTTCTACCAGACGCAACCTAGGCAATGTGGTTCCTCATCCATTATCATTAAAGATCCTTATGATAATGATAAGAAAACAGGCAACAACGACCAAAAGGGAAGAAGTAATGATCGTGACACGTGCTCTACAATGATACCTAGTAAGAATAATAATGGATCCGGTGGTGTTTTAGAGTACTACAGTTCTCCTTACATGAGTTATGAGCATGTGGGGGTGGGTCATCATAATAACAACGTTAGAGAAAGTTCACCTCAACTTATTCCAAACTGGGTTGTCCAAGGTGATGCTTCTTCTTTCTTTTCTTTTAGCAATGGATTGAAGCATACAAAGACATGTCGCCAAGATCAGCTTCCTGCTAGAGCGCAGTAG 999 0.4264 MTWCNESQDEEGIRIQLNNPTTSETRITCPSCGHTLEFQDQGDILNQLPGLPSGMKFDPNEQEILQHLEAKVECDVRKLHPLIDQFIPTIEGENGICYTHPEKLPGVSKDGQIRHFFHRPSKAYTTGTRKRRKVHSSDNEGGGGETRWHKTGKTRPVFINVELKGFKKILVLYTNYGRKRKPEKTSWVMHQYHLGTNEEEKEGQLVLSKVFYQTQPRQCGSSSIIIKDPYDNDKKTGNNDQKGRSNDRDTCSTMIPSKNNNGSGGVLEYYSSPYMSYEHVGVGHHNNNVRESSPQLIPNWVVQGDASSFFSFSNGLKHTKTCRQDQLPARAQ 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0811 332 MobiDBLite consensus disorder prediction 124 151 - -
Lele13g0811 332 Gene3D NAC domain 60 217 IPR036093 GO:0003677|GO:0006355
Lele13g0811 332 MobiDBLite consensus disorder prediction 131 151 - -
Lele13g0811 332 ProSiteProfiles NAC domain profile. 51 213 IPR003441 GO:0003677|GO:0006355
Lele13g0811 332 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 19 237 IPR044799 GO:0003700
Lele13g0811 332 MobiDBLite consensus disorder prediction 222 258 - -
Lele13g0811 332 Pfam No apical meristem (NAM) protein 52 194 IPR003441 GO:0003677|GO:0006355
Lele13g0811 332 SUPERFAMILY NAC domain 45 213 IPR036093 GO:0003677|GO:0006355
Lele13g0811 332 MobiDBLite consensus disorder prediction 228 247 - -
Lele13g0811 332 FunFam NAC domain-containing protein 73 60 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0811 Lele-ChrLele13 19859492 19862221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0811 1 222 NAC Transcription Factor Family AT4G28500 66.234 2.00e-112 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele13g0811 NAM 3.8e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0811 13 19859492 19862221 Lele13g0811 13 19859492 19862221 ECH
Lele13g0811 13 19859492 19862221 Lele14g0702 14 18244542 18247209 ECH
Lele13g0811 13 19859492 19862221 Lele15g1668 15 9931420 9934931 hybridization
Lele13g0811 13 19859492 19862221 Lele16g1704 16 9894613 9897342 hybridization