Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0793 ATGGCTCCCAGGGAGAAGCCCGCCGCCGTTAAACCGAACGTTCACAGCGGTCTCAAGGAGGTGCATTTTAGGGGGGTTAGGAAGAGACCCTGGGGCAGATACGCCGCTGAAATTAGAGATCCCGGCAAAAAGAGCCGTGTTTGGCTCGGCACTTTTGATACCGCTGAAGAGGCTGCCCGAGCCTACGACGCCGCAGCACGGGAATTCCGTGGGGCCAAGGCTAAAACCAACTTCCCTTTCCCTTCTGAGAATGTGAGCCAACAAACCAGTCCGGCTCAGAGCAGTACGGTCGAGTCTTCCAGCCGTGAACGTGAGCCGGCTCGCGAGATGGATTCCTCACCGTTCAATCTCAACTTGTCATCCCACGCCGGGGGATCTGTCACCAGCTCCGTGCGCTTCCCTTTCCAGCAGCAGTTTCCGTTTCCGGCTGCAGTATTTTCCGGCACGATTCCGCAGGTGAATCAGGAGTTTTACTTTGACGCGGTAATACGCGCTAGCATGGCGGCGGGTCAGGCCTTCCACGGAATCGCGTTCGACGAGCGTCGGTCCGCGGCTAGCGAATATCGCTTCGGCGGAGTGCAGAGCGATTCCGATTCCTCCACGGTGATCGATCTCAACGTCCGCGATGACGAGAAGACTCCTCGGAAGGAGTTGGATTTCGATCTCAACGAACCCGCTCCGGAGGAAATGGCATGA 696 0.5776 MAPREKPAAVKPNVHSGLKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPFPSENVSQQTSPAQSSTVESSSREREPAREMDSSPFNLNLSSHAGGSVTSSVRFPFQQQFPFPAAVFSGTIPQVNQEFYFDAVIRASMAAGQAFHGIAFDERRSAASEYRFGGVQSDSDSSTVIDLNVRDDEKTPRKELDFDLNEPAPEEMA 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0793 231 MobiDBLite consensus disorder prediction 203 223 - -
Lele13g0793 231 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Lele13g0793 231 MobiDBLite consensus disorder prediction 191 231 - -
Lele13g0793 231 FunFam Ethylene-responsive transcription factor 2 21 80 - -
Lele13g0793 231 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Lele13g0793 231 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Lele13g0793 231 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 166 - -
Lele13g0793 231 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Lele13g0793 231 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Lele13g0793 231 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Lele13g0793 231 MobiDBLite consensus disorder prediction 76 116 - -
Lele13g0793 231 MobiDBLite consensus disorder prediction 79 100 - -
Lele13g0793 231 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Lele13g0793 231 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0793 Lele-ChrLele13 19764961 19765656 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0793 19 227 AP2-EREBP Transcription Factor Family AT5G44210 42.991 3.59e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele13g0793 AP2 3.4e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0793 13 19764961 19765656 Lele13g0793 13 19764961 19765656 ECH
Lele13g0793 13 19764961 19765656 Lele14g0683 14 18133787 18134482 ECH
Lele09g0652 09 4959240 4959878 Lele13g0793 13 19764961 19765656 ECH
Lele10g0597 10 4392051 4392683 Lele13g0793 13 19764961 19765656 ECH
Lele11g0667 11 6361751 6364150 Lele13g0793 13 19764961 19765656 ECH
Lele12g0673 12 15006717 15007358 Lele13g0793 13 19764961 19765656 ECH
Lele13g0793 13 19764961 19765656 Lele15g1686 15 10033472 10034167 ECH
Lele13g0793 13 19764961 19765656 Lele16g1724 16 10021738 10022433 ECH
Lele14g0683 14 18133787 18134482 Lele13g0793 13 19764961 19765656 ECH
Lele15g1686 15 10033472 10034167 Lele13g0793 13 19764961 19765656 ECH
Lele16g1724 16 10021738 10022433 Lele13g0793 13 19764961 19765656 ECH
Lele13g0793 13 19764961 19765656 Lele15g1686 15 10033472 10034167 hybridization
Lele13g0793 13 19764961 19765656 Lele16g1724 16 10021738 10022433 hybridization