Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0792 ATGACTTCTTCGTCGTCTTCGCCTTCTTCCATGTCGCGCGAGGGACACTACAGAGGGGTGAGAAAGCGACCGTGGGGTCGATATGCCGCCGAGATTCGCGACCCCTGGAAGAAAACGCGCGTCTGGCTGGGCACGTTCGACACTCCGGAAGAGGCGGCGCTGGCCTACGACGGTGCTGCACGTTCCCTCCGTGGTCCGAAGGCCAAAACCAACTTCCCTCCGGCTCCGGTGGCTACCGGAGGTCTCTCCCTCGACCTCAACGCCCCGACCTCTGATCATCGTTGGCCCCCCATCCCCTCCGGTCGCCTTGTGCTGAACGAGCTTCTCCATGCGGGCGTACTCAAGGACATGTCTTTCGATCATCCTCCGCCTTCGCCTGCAACTCCCATTGCCGCTATGGTTCACAACCGGCGTGAAGGTTCCGTCTCCGTGGACGGAGGTCATCATCCGGTGCCTGAGAGCTCTCCCACGGCTTCATTTCTCGGTCTTGTTAGGCGAGGCCTGCCGATCGACCTGAACGAACCTCCTCCCGTGTGGCCTTAA 543 0.6151 MTSSSSSPSSMSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGPKAKTNFPPAPVATGGLSLDLNAPTSDHRWPPIPSGRLVLNELLHAGVLKDMSFDHPPPSPATPIAAMVHNRREGSVSVDGGHHPVPESSPTASFLGLVRRGLPIDLNEPPPVWP 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0792 180 Pfam AP2 domain 16 65 IPR001471 GO:0003700|GO:0006355
Lele13g0792 180 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 114 - -
Lele13g0792 180 CDD AP2 16 75 IPR001471 GO:0003700|GO:0006355
Lele13g0792 180 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Lele13g0792 180 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Lele13g0792 180 FunFam Ethylene-responsive transcription factor 2 16 74 - -
Lele13g0792 180 SUPERFAMILY DNA-binding domain 16 73 IPR016177 GO:0003677
Lele13g0792 180 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700|GO:0006355
Lele13g0792 180 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Lele13g0792 180 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0792 Lele-ChrLele13 19749744 19750286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0792 9 179 AP2-EREBP Transcription Factor Family AT1G28360 46.117 3.21e-42 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele13g0792 AP2 1.6e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0792 13 19749744 19750286 Lele13g0792 13 19749744 19750286 ECH
Lele13g0792 13 19749744 19750286 Lele15g1688 15 10046437 10046985 hybridization
Lele13g0792 13 19749744 19750286 Lele16g1726 16 10034725 10035270 hybridization