Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0790 ATGGAGTCTGAGGGGCAAGAGAGGAACTTGAGTCTAGTTTCTTCTGTGGCAGGAAACCCTGATACAGTGTCTGCAGAAAATAATGACTCATGTAAGGTTCTTACAATGGAAAAGGAAGATTTTCAGCTGGAACATGTGACTCAAAGTAGTCCAAATAAAAGAAATAATATGGGTACTGCTGAAGATGATAAACATAAAGGGTTAGATGTTGCTAATGAAAGTAATGGATCCCCTCTAAAATGTAAAACCTTTAAAGCATACCATGAACCAAGTTCTGACAGCAAAGCTTATTTATGTGGTGCTAAAGAGTCTGGAACTGTCAAATCATCCGGTGATGCTGAAAAAGATGTGGCCATTGACATCCAGCAGAGAGGCTGCTCTGTTGAGGATGCCTACGTTGGCACTCAGAATTCCATAAACAAAATAAAGCAATTGGACATGCATTCAGGGGATGAAATGAAGCAAATGACATCAAGATTTACTTCCCCTGATATGAGGACTCAAGAGTCTATCTCCCAGTGTGGAGATGAAGATGCAAACAAACGGCCAGCCATGATATGCAGCTTTTTTGCTAAAGGATGGTGTTCAAAAGGCAGTTCGTGCAGGTTTCTTCGTATAAAAGATCATTTAAATAATCCTGGCCAGCAGGCTGAAGGAGACTTGGTTTCTACAAATTGGAAGAGAGAAAGGCAATTGGAGGAAGGTATATATAAAATAACTTTGCAACCCAATCTGTTCAAGAATCTTCTCTGCAAAGATGTTTCTAATAAAAGTGCTCTCCTCATGAAACAAGAAACAGGCCCGAGTCAGCATCCACCTAAAAATAAACAGAAGTTTCCATTACTTTCGAAAGAGGATTTATGTTCTAAGAATCATGTCTTACCAAATGGTAGAGACAGTTCTGCATCAAGGGATGGCTTGATTCTGGAAAATAGATCTATATTTAATGCGTCAAACAACTATTTCAGCAGGAATCTCTCTTCTTATCCATCCTGTGTGGAGGGATTGGCTCCCATTAAAAACCAACAGGTGTATAACAAATATACTTCCCAAGTTTCAGCTCCATCAAGTTATTCGATGTCTTCGAATTTATCTATTGGTGCAAGTACTTTGGATGCTCAAAAGCTGTTGAAAAGTGCCAAAGAATATCATGTCCCTAGATCCACTTTCTTAGGTTCGGAATGGGAGGAGTTGCCCGTAACTAGTTCATATGGAGTTCAGCCACATGCCACTGGATATAAAATAAAAATATCTTCTCATGATTGGGAGCCATCTGTACCTTTTCGACCATCATTTTTTATTACTTCAGCCAGTATATCGTCTTCTGGAGAGATGTATGACCCATTTCATCCTTGTGTTGAAATAACCAATATAGGAGATGGATCCCTGAAAGCTTCCTTTTTTATTCACGGGCCTCCCATCCAGGCTTCATCTCAGGTGCGGACATATGGCGATTGTGCTGTAGCTGGGGACAAGGTGGCAGATATTAATGACGACAAGAGTTCTGTATATTCTCATCACAGATTTTATGAGAATGAGGCAAACAAGAGTTATATTCCTTCAGAAAAAGATTACTGTGAACATGAAATGGAGACAACAGCCTGA 1605 0.3981 MESEGQERNLSLVSSVAGNPDTVSAENNDSCKVLTMEKEDFQLEHVTQSSPNKRNNMGTAEDDKHKGLDVANESNGSPLKCKTFKAYHEPSSDSKAYLCGAKESGTVKSSGDAEKDVAIDIQQRGCSVEDAYVGTQNSINKIKQLDMHSGDEMKQMTSRFTSPDMRTQESISQCGDEDANKRPAMICSFFAKGWCSKGSSCRFLRIKDHLNNPGQQAEGDLVSTNWKRERQLEEGIYKITLQPNLFKNLLCKDVSNKSALLMKQETGPSQHPPKNKQKFPLLSKEDLCSKNHVLPNGRDSSASRDGLILENRSIFNASNNYFSRNLSSYPSCVEGLAPIKNQQVYNKYTSQVSAPSSYSMSSNLSIGASTLDAQKLLKSAKEYHVPRSTFLGSEWEELPVTSSYGVQPHATGYKIKISSHDWEPSVPFRPSFFITSASISSSGEMYDPFHPCVEITNIGDGSLKASFFIHGPPIQASSQVRTYGDCAVAGDKVADINDDKSSVYSHHRFYENEANKSYIPSEKDYCEHEMETTA 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0790 534 MobiDBLite consensus disorder prediction 1 75 - -
Lele13g0790 534 Gene3D - 176 284 - -
Lele13g0790 534 ProSiteProfiles Zinc finger C3H1-type profile. 181 208 IPR000571 GO:0046872
Lele13g0790 534 MobiDBLite consensus disorder prediction 1 31 - -
Lele13g0790 534 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 48 504 - -
Lele13g0790 534 SUPERFAMILY CCCH zinc finger 181 204 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0790 Lele-ChrLele13 19737080 19738953 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele13g0790 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0790 13 19737080 19738953 Lele13g0790 13 19737080 19738953 ECH
Lele13g0790 13 19737080 19738953 Lele15g1691 15 10058298 10060779 hybridization
Lele13g0790 13 19737080 19738953 Lele16g1728 16 10047130 10051485 hybridization