Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0787 ATGCCGGCACAGAAGCGCTTGTTCGACGCACCAGAAGAGGGCGCTTTACACGGCGAGAGGAACCGCCATGAGAAGCCAGAAGATGGATTGGAATCCGATCGAAGCCCTTCGGAGAGCACCGGCGACAAAGAAGAGTTTGTTGTCATAAAATTGGCAGATATACGCAAGGAAGTTCAGTGTCCTATCTGCCTAGGCATCATTCGAAAAACGAGAACCGTAATGGAATGCCTGCACCGCTTTTGCAGAGATTGTATAGACAAATCAATGCGCCTTGGCAACAATGAGTGCCCTGCTTGTCGCACACATTGTGCTAGCCGACGCTCACTGAGAGATGACCCAAACTATGATGCTTTAATTGCTGCTCTCTATCCAAATATAGATAAGTATGAGCAGGAGGAATTGGCTCTGCATGAAGATGAAAAAGCTCGCAATAAGCAGATCCAAGAATCTATTGCTCAGACTCTTCAACGACAGGCAGAAGCACTGGGTAAAAAACGCAATACCAAAGCGATTACAAGGAGGTCACAAGGTAACTATCGAACTTCGCATGTGAGGGCAAGAAGAAATTGTAGAAGTACGGTTGAACTTCAGGGATCTGATGGCACTGAGGACATGAATGATGATGATGGGGCCAAGGGTTCTTCTTCTGGTGATGAGCTGATAGAAATCAGGTCAAAAAGATGTAAAAGAGGGGCAGAAGCACAATTTCCTCCCCATTCTGCAACCACTGTTGCAGATGGTGCAAGTGATGAAAATGCTCCTGAAGTGAATAGAGAATTCTTGAGTCCTTCTAGTACACTTGCCTGGGGAAAAAATGGTCACCGCAGTCACACCCGAGTCAATGGCAAGAGTGCCAGAAATAGTCGCCTTGCCAAATTGATTGATAATCTCCGTAGCTTGGAAGAAAACGATGATGAGTTGTGTGTCTGCCTCATGCTTGTGCCTTTTGATGAGAAAGGAATACCAAGTTTGCAGCAGCCATACCTCTGCTGCAGACCTACATTGTCTGTCAGGCACCTGTGCCAGTACGTTGCACTTCAAACAGCTGTACAGGCTGATGAGGTTGAGATATGCTTGGTAAAAGAGCAGCAAGCCAACATTATTAGAGCTGCAGGCTCAGTAGATACATGCAAAGATAATTTGCAAGTGTTGAGAGAGCAGGAAACTTTGGCCGAACTTAAACCTGATAATTTTAGCTGTGGCCATCTGGTAAACCTTATGGACATCACGTGA 1233 0.4607 MPAQKRLFDAPEEGALHGERNRHEKPEDGLESDRSPSESTGDKEEFVVIKLADIRKEVQCPICLGIIRKTRTVMECLHRFCRDCIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPNIDKYEQEELALHEDEKARNKQIQESIAQTLQRQAEALGKKRNTKAITRRSQGNYRTSHVRARRNCRSTVELQGSDGTEDMNDDDGAKGSSSGDELIEIRSKRCKRGAEAQFPPHSATTVADGASDENAPEVNREFLSPSSTLAWGKNGHRSHTRVNGKSARNSRLAKLIDNLRSLEENDDELCVCLMLVPFDEKGIPSLQQPYLCCRPTLSVRHLCQYVALQTAVQADEVEICLVKEQQANIIRAAGSVDTCKDNLQVLREQETLAELKPDNFSCGHLVNLMDIT 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0787 410 Pfam Zinc finger, C3HC4 type (RING finger) 59 99 - -
Lele13g0787 410 PANTHER OS11G0578200 PROTEIN 20 399 IPR044592 -
Lele13g0787 410 Coils Coil 283 303 - -
Lele13g0787 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 130 IPR013083 -
Lele13g0787 410 MobiDBLite consensus disorder prediction 10 42 - -
Lele13g0787 410 MobiDBLite consensus disorder prediction 1 42 - -
Lele13g0787 410 ProSiteProfiles Zinc finger RING-type profile. 60 100 IPR001841 -
Lele13g0787 410 Coils Coil 137 157 - -
Lele13g0787 410 MobiDBLite consensus disorder prediction 160 283 - -
Lele13g0787 410 ProSitePatterns Zinc finger RING-type signature. 76 85 IPR017907 -
Lele13g0787 410 CDD RING-HC_RING1_like 60 100 - -
Lele13g0787 410 MobiDBLite consensus disorder prediction 205 233 - -
Lele13g0787 410 SMART ring_2 60 99 IPR001841 -
Lele13g0787 410 SUPERFAMILY RING/U-box 47 131 - -
Lele13g0787 410 MobiDBLite consensus disorder prediction 258 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0787 Lele-ChrLele13 19723975 19727930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0787 58 185 C3H Transcription Factor Family AT2G30580 29.197 2.87e-07 50.1