Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0777 ATGGCAGAAAACGTTGCAGGTAGTTGGTCCAGAGGCGACAGGAAAGTCATAGAGAGGAACAGAAGAAGCCAAATGAGGGCTCTTTGCTCCCAGCTCACCTCACTCGTCCCTCGTCATCAATCCTCAAGGGAAGTGATTTCTCTGCCGGATCAGCTGGATGAAGCCACAACCTACATCAAGAAGCTTCAGATGAGGTTGGAGAAGATGAAGGAGAAGAAACTCAGCCTTATTGGAACAGCCGACAATAAGAGAAAAGTTAATGGGAGCTTAATTAACAATAGAGGAATCATTAAGGGGTCCAAATCGCCTAAAATTGAGATCCACCAAATGGGTTCAGCATTAGACGTTTCTGCAATTACTGGGTTGGATTGCCAGTTCATTTTCAACGAGTTCATTCGCATTCTTCACGAAGAACAAGCCGATATTGTTAACGCCAGTTATTCAGTCGTTCAAGATGCAGTTTTCCATACCATTCAATGTCAGCTAGGAGAATGTGGTAACAGAGCTGAGAGGATTTCGGAGAGGTTAAGGAGGTTTGTGTATGGTTCTGGTGCTTTTTGA 561 0.4439 MAENVAGSWSRGDRKVIERNRRSQMRALCSQLTSLVPRHQSSREVISLPDQLDEATTYIKKLQMRLEKMKEKKLSLIGTADNKRKVNGSLINNRGIIKGSKSPKIEIHQMGSALDVSAITGLDCQFIFNEFIRILHEEQADIVNASYSVVQDAVFHTIQCQLGECGNRAERISERLRRFVYGSGAF 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0777 186 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 13 181 IPR015660 -
Lele13g0777 186 Pfam Helix-loop-helix DNA-binding domain 11 63 IPR011598 GO:0046983
Lele13g0777 186 Gene3D - 8 91 IPR036638 GO:0046983
Lele13g0777 186 SMART finulus 15 68 IPR011598 GO:0046983
Lele13g0777 186 Coils Coil 52 79 - -
Lele13g0777 186 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 9 62 IPR011598 GO:0046983
Lele13g0777 186 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 14 76 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0777 Lele-ChrLele13 19636179 19637011 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0777 13 180 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 45.714 8.58e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele13g0777 HLH 2.1e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0777 13 19636179 19637011 Lele15g1706 15 10180486 10181398 hybridization
Lele13g0777 13 19636179 19637011 Lele16g1742 16 10162318 10163370 hybridization