Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0771 ATGATCGTCACGAACACGCCGTCGCAGGACCTCGCTCTTACCAATCTCGCCTTCTGCTCACACTCTGATCTTCAGAACTTCGCTGTCCCGGGTTTCAAAAATCGTCGGTGTGCCAAAGTTTCTGCTGCTGAGTCGATACCTGTGAGCAGATTCGTTCCACCTGACAATTTCAATCTGGCAATGTTAACCCTTGAGTTGGACTTCATCAAAAAGGGAAGTAAAAGTGAACAGATTGATGCAGTTCAGCTGGGTAAGCAGCTCAAAAAGAGATTTGTAAACCAGGTCATGACTGCGGGGCAGAAAGTGCTGTTCGAGTATCATGGAAATAATTATAGTTTCACAGTGTGTCAAGCTGTTGTTGAGGGTCAAGATAAATCTAATTCCGTTGAAAGAGGGATGCTATTGGATGACACATACGTTGTATTTGAAACATCACGTGATAGTGGAATAAAGATTGTCAATCAGCGTGAGGCTGCCACAAGCAACATGTTTAAGCAGAAAGAGTTCAATCTTCAGTCATTAGGTATTGGGGGTTTGAGTGCAGAATTTGCAGATATATTTCGAAGAGCTTTTGCATCTCGTGTTTTCCCTCCCCATGTGACTTCTAAGCTAGGGATCAAGCATGTGAAGGGCATGCTACTTTATGGACCTCCTGGGACTGGAAAAACTCTTATGGCACGTCAAATTGGAAAAATTTTGAATGGGAAGGAACCAAAGATTGTAAATGGTCCTGAAGTCTTGAGTAAATTTGTTGGTGAAACTGAGAAGAATGTGAGGGACCTATTTGCTGATGCTGAAAGGGATCAGAAGACTCTAGGGGATGAAAGTGAATTGCATGTCATAATTTTTGATGAAATTGATGCTATTTGCAAGTCAAGAGGTTCAACTCGAGATGGCACAGGAGTTCATGATAGTATTGTAAATCAACTTCTCACTAAGATAGATGGTGTGGAATCGCTGAATAATGTTTTGCTTATTGGAATGACCAACAGAAAGGACATGCTGGATGAAGCTCTTATGAGACCGGGGAGACTAGAAGTCCAAGTTGAGATAAGCCTTCCTGATGAAAATGGCCGATTGCAGATTCTTCAAATTCATACTAACAAGATGAAGGACAATTCTTTTTTATCTCCTGATGTGAATCTTCAAGAGCTTGCTGCTCAAACCAAAAACTACAGTGGTGCTGAACTTGAAGGTGTTGTGAAGAGTGCAGTATCATTTGCTTTAAATAGACAACTTAGTCTAGATGATCTAACCAAGCCAGTGGAGGAAGAGAATATCAAGGTTACAATGGACGATTTTTTGAATGCACTTCATGAAGTTGTTCCTGCATTTGGAGCTTCAACTGATGACCTTGAAAGATGCAGTGGTAAGACTGCACTTGCAGCTAGTGTTGGCATTGACAGCGATTTCCCATATGTCAAGATTGTTTCAGCTGAATCAATGATTGGTCTCCATGAAAGCACTAAATGTGCACAGATTATCAAGGTTTTTGAGGATGCATACAAGTCACCATTGAGCGTCATTATTCTTGATGACATTGAGAGATTGTTGGAGTATGTGGCCATTGGTCCACGGTTTTCAAATTTGATTTCTCAGACACTACTGGTCCTGCTAAAACGGCTTCCTCCAAAGGGAAAAAAGCTCCTGGTTATTAGTACAACAAGTCAACTGATTTTCTTGGACTCAATTGGATCTTGTGATGCTTTCTCTGTCAGTTACCATGTTCCTACATTGAACACAAATGATGTCAAGAAGGTTCTAAAACAGTTGAATGTCTTTGCTGAGGGTGATGTTGATGATGCTGCGGAGGCCTTGAATGATATGCCTATCAAGAAGCTATACAGGTTGATTGAGATGGCAGCCCAAGGTGAACATGGTGGATCTGCAGAAGCAATCTATTCTGGCAAAGAGAAGATTCAGCTATCTCACTTCTATGATTGCCTTCAGGATGTTGTCCGAGTATGA 1968 0.4151 MIVTNTPSQDLALTNLAFCSHSDLQNFAVPGFKNRRCAKVSAAESIPVSRFVPPDNFNLAMLTLELDFIKKGSKSEQIDAVQLGKQLKKRFVNQVMTAGQKVLFEYHGNNYSFTVCQAVVEGQDKSNSVERGMLLDDTYVVFETSRDSGIKIVNQREAATSNMFKQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAERDQKTLGDESELHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALMRPGRLEVQVEISLPDENGRLQILQIHTNKMKDNSFLSPDVNLQELAAQTKNYSGAELEGVVKSAVSFALNRQLSLDDLTKPVEEENIKVTMDDFLNALHEVVPAFGASTDDLERCSGKTALAASVGIDSDFPYVKIVSAESMIGLHESTKCAQIIKVFEDAYKSPLSVIILDDIERLLEYVAIGPRFSNLISQTLLVLLKRLPPKGKKLLVISTTSQLIFLDSIGSCDAFSVSYHVPTLNTNDVKKVLKQLNVFAEGDVDDAAEALNDMPIKKLYRLIEMAAQGEHGGSAEAIYSGKEKIQLSHFYDCLQDVVRV 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0771 655 Pfam ATPase family associated with various cellular activities (AAA) 212 352 IPR003959 GO:0005524|GO:0016887
Lele13g0771 655 Pfam ATPase family associated with various cellular activities (AAA) 456 557 IPR003959 GO:0005524|GO:0016887
Lele13g0771 655 FunFam Vesicle-fusing ATPase 55 152 - -
Lele13g0771 655 Gene3D - 354 441 - -
Lele13g0771 655 Pfam Cell division protein 48 (CDC48), domain 2 77 122 IPR004201 -
Lele13g0771 655 FunFam Vesicle-fusing ATPase 354 441 - -
Lele13g0771 655 PANTHER VESICULAR-FUSION PROTEIN NSF 34 455 IPR039812 GO:0016887|GO:0035494
Lele13g0771 655 Pfam AAA+ lid domain 379 434 IPR041569 -
Lele13g0771 655 Gene3D - 455 577 IPR027417 -
Lele13g0771 655 Gene3D - 160 353 IPR027417 -
Lele13g0771 655 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 450 IPR027417 -
Lele13g0771 655 Gene3D - 1 52 - -
Lele13g0771 655 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 456 622 IPR027417 -
Lele13g0771 655 SUPERFAMILY Cdc48 domain 2-like 54 157 IPR029067 -
Lele13g0771 655 CDD AAA 210 353 - -
Lele13g0771 655 FunFam vesicle-fusing ATPase isoform X1 452 577 - -
Lele13g0771 655 SMART AAA_5 451 565 IPR003593 -
Lele13g0771 655 SMART AAA_5 208 355 IPR003593 -
Lele13g0771 655 FunFam Vesicular-fusion ATPase SEC18 164 354 - -
Lele13g0771 655 CDD AAA 456 555 - -
Lele13g0771 655 ProSitePatterns AAA-protein family signature. 323 341 IPR003960 GO:0005524|GO:0016887
Lele13g0771 655 Gene3D - 54 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0771 Lele-ChrLele13 19571760 19581582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0771 176 427 Calmodulin-binding Proteins AT3G56690 33.858 1.29e-30 126