Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0763 ATGGCCTTTGAGCGCTATGTTTCCCGGGAATGGAAAAACATTCCAAGTTCCATGACAACAGAGACCAGAAACTACGACAGTTCTTTCGATTGCAACATTTGCTTTGACTTTGCTCTTGAACCTGTGGTCACCCTCTGTGGTCATCTCTATTGCTGGCCCTGCATCTACAAGTGGCTCCATGTCCAAAGTTCTTCTCTCGTATCCGATGAGCGCCCACAATGCCCTGTCTGCCGGGCTGATATATGTCCCACCACCTTGGTCCCCCTCTATGGCCGGGGCCAAACCCAGGCTCCTTCTGAGCAAGACAAAAAGGCATCGTGTAGCGATATTTTTATACCGCCAAGACCGCGAGCTTTTGGCGCTCAAGCTCTGATGTCAGCATCATCATCATCTTCTCAAGGTGGTCATCATCGTCAGCATGTTCCTTATCATTATCCTCATCATCACAGTCATCAACAAGTGCTCAATCTCAGCACCACTCTTACACCTCAAGGATTTCACCACCCTGTGGCCGGGATGGTTTATACCACGGTGTTCGGCAACCCGGAAAATTTATATGCCTACCCGAATTCTTATCAGCAGATGGGCAGTAATAGCCCAAGACTGAGAAGGCAAGTGATGCAAGCAGATAAGTCACTGAACAGAATCTCAATGTTCCTCTTCTGCTGTTTTGTTTTATGTCTCATCGTCTTCTGA 696 0.4799 MAFERYVSREWKNIPSSMTTETRNYDSSFDCNICFDFALEPVVTLCGHLYCWPCIYKWLHVQSSSLVSDERPQCPVCRADICPTTLVPLYGRGQTQAPSEQDKKASCSDIFIPPRPRAFGAQALMSASSSSSQGGHHRQHVPYHYPHHHSHQQVLNLSTTLTPQGFHHPVAGMVYTTVFGNPENLYAYPNSYQQMGSNSPRLRRQVMQADKSLNRISMFLFCCFVLCLIVF 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0763 231 CDD RING-HC_AtRMA_like 29 79 - -
Lele13g0763 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 97 IPR013083 -
Lele13g0763 231 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Lele13g0763 231 ProSiteProfiles Zinc finger RING-type profile. 31 78 IPR001841 -
Lele13g0763 231 SMART ring_2 31 77 IPR001841 -
Lele13g0763 231 Pfam Zinc finger, C3HC4 type (RING finger) 31 77 IPR018957 GO:0046872
Lele13g0763 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 10 228 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lele13g0763 231 SUPERFAMILY RING/U-box 19 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0763 Lele-ChrLele13 19518404 19519099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0763 6 217 C3H Transcription Factor Family AT4G27470 38.739 3.04e-42 142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0763 13 19518404 19519099 Lele13g0763 13 19518404 19519099 ECH
Lele13g0763 13 19518404 19519099 Lele16g1758 16 10291183 10291875 hybridization