Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0762 ATGGCTGAAAGATTAACGGAGCAGAAGAAGCTCATCAACAACAGAGCTGCCTCCGGCGGCGGCCAGTCTCCGAGGGGACGGTGCGCGGCGCCGTTTCTGTTAAAGACGTATGATTTGGTGGAAGAAGGCGGAGTAGCAGAAGGTGAAGAAGAAAGAGTAGTGTCATGGAATGAGGAAGGAGATTGTTTTGTAGTGTGGCGTCCTGCAGAATTCTCAGAGCTCATCTTGCCCAGATTCTTCAAGCACAACAACTTCTCCAGTTTCATCCGCCAATTAAACACCTACGGATTTAAGAAAGTGTCATCAAAGAGATGGGAATTCAAGCAGGAGAATTTTAAGAGAGGCTGCAAGAACATGCTGGCGGGGATAACGAGGAAGAAGTGCGAGGCAAGCGTGTTCCCTTCATACCTGAAGTCTTGTTGTGAAGAAAATGCAGCCACAAGCTGTGCAGGAGATGAACAAAGCAATAATAATCATAATGATCATGAATTACTGCTACAGCAGAACCAAGACCTCAAGAAGCAGAACCAGCACCTTCAATCCCAAATTGCTCACTTCAAACAATTACAAACCAGGTTGTTGAATTGCGCCTCTCATGTAGTAAACTGTCTAGATTCAACAACCCTAGTCATGGAATCGAAGCTATTTAGCAGAATAGCGATGCAAAGTACGATCGCCAGCAGATTCTACTACACGAGTAGGACTAGGAAACCCAGTCTCTACACTAAAATCAGCCCACTGGGGAGCCCCAGCACCCGCGTGGTAACTGAGCTCGAGGATTGGGTCTATAAGGGGAACAAGATCAGTGTAGGCGAGCTAAAGCGCATCGTTCGAGATCTTCGCAAGCGCAGGAGGTTCACCCAAGCCCTAGAGGTATCTGAGTGGATGAATAAGAATGGTGTATGCGTATTTTCATCCCCCGAACATGCTGTGCATTTAGATCTGATGGGCAAAGTTCATGGATTTCCTTCTGCTGAAGGCTATTTTAATAGCTTGAAGGAAGAAGATAAAAATAACAAGACATATGGTGCTCTCTTGAATTGCTATACACGGCAGCACCAAACTGAGAAGGCCCTCTCCCATCTGCAGAAAATGAAAGAGTTGGGGTTTTCTTCATCTCTAAGTTACAATGATATTATGTGTCTATACACCAACATTGGTCAGGTTGAGAAGGTCCCTGATGTTCTGATCGAGATGAAAAAGAACAAAGTTTTGCCTGACAACTTCTCCTACAGAATCTGTATCAATGCTTTTGGTGCGAGGTCTGATATTGATGGAATTGAAAGAACACTAAAGGAGATGGAAAACCAATCTCACATTGTCATGGATTGGAACACTTACGCCGTCGTGGCTGATTTCTATATAAAAGCAGGACTTACAAGTAAGGCAGTTGATGCCTTAAAGAAAGCAGAGGAGAGGCTAGATAAGAAGGATGGTCTTGGCTACAATTTTCTTATTTCTCTTTATGCTCGTCTTGGAGACAAGACGGAGGTCATCAGATTATGGGAACGGGAGAAGAGTGATTGCAAGAGGTGCATAAACAGAGATTTCACCACCGTGTTAGAATCTCTGGTAAGGCTTGGTGAGCTGGATGAAGCTGAGAAAATATTGAAGAAGTGGGAGTCATCTGGCAATTATTATGATCCTCGCGTCCCAGATGTTGTCATCAGTGGATACTCAAAAAATGGTTTGCATGAGGAAGCAGAAATCATGCTGAAAAACTTACAAAAGAGGGGGAAGTCGACCATGGCAAACAGGTGGACTGAAGTGGCAGGGGGATACCTTCGTAAGGGTGAGATGGAGAAAGCATATGATTGCTTTAAAGCAGCCCTACAGGCGGAAAATAAAGAATGGAAGCCGAATCCCAGGGTGTTCCCTGGCATAGTTAATTGGCTTGGTGATAACGGAAGTGTTGAAGAAGTAGAAGCCTTGTTGGGTTCATTGAGAAATTTTGTCCCGGTAAACAAACGAATGTACCACGCCCTCATCAAGGCTTATGTGAGACATGGAAAAGAGGTAGGTGGGCTTTTGGATCGTATGAAGAAAGATAATATTGATCAAGATGAAAAAACGAAAGAAATTCTTGATACGAGGAAGCCGTAG 2103 0.4437 MAERLTEQKKLINNRAASGGGQSPRGRCAAPFLLKTYDLVEEGGVAEGEEERVVSWNEEGDCFVVWRPAEFSELILPRFFKHNNFSSFIRQLNTYGFKKVSSKRWEFKQENFKRGCKNMLAGITRKKCEASVFPSYLKSCCEENAATSCAGDEQSNNNHNDHELLLQQNQDLKKQNQHLQSQIAHFKQLQTRLLNCASHVVNCLDSTTLVMESKLFSRIAMQSTIASRFYYTSRTRKPSLYTKISPLGSPSTRVVTELEDWVYKGNKISVGELKRIVRDLRKRRRFTQALEVSEWMNKNGVCVFSSPEHAVHLDLMGKVHGFPSAEGYFNSLKEEDKNNKTYGALLNCYTRQHQTEKALSHLQKMKELGFSSSLSYNDIMCLYTNIGQVEKVPDVLIEMKKNKVLPDNFSYRICINAFGARSDIDGIERTLKEMENQSHIVMDWNTYAVVADFYIKAGLTSKAVDALKKAEERLDKKDGLGYNFLISLYARLGDKTEVIRLWEREKSDCKRCINRDFTTVLESLVRLGELDEAEKILKKWESSGNYYDPRVPDVVISGYSKNGLHEEAEIMLKNLQKRGKSTMANRWTEVAGGYLRKGEMEKAYDCFKAALQAENKEWKPNPRVFPGIVNWLGDNGSVEEVEALLGSLRNFVPVNKRMYHALIKAYVRHGKEVGGLLDRMKKDNIDQDEKTKEILDTRKP 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0762 700 PRINTS Heat shock factor (HSF) domain signature 88 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele13g0762 700 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele13g0762 700 Coils Coil 162 189 - -
Lele13g0762 700 SUPERFAMILY "Winged helix" DNA-binding domain 30 126 IPR036390 -
Lele13g0762 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Lele13g0762 700 Gene3D Tetratricopeptide repeat domain 439 613 IPR011990 GO:0005515
Lele13g0762 700 Pfam HSF-type DNA-binding 32 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele13g0762 700 Gene3D Tetratricopeptide repeat domain 373 438 IPR011990 GO:0005515
Lele13g0762 700 SUPERFAMILY TPR-like 428 653 IPR011990 GO:0005515
Lele13g0762 700 ProSitePatterns HSF-type DNA-binding domain signature. 76 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele13g0762 700 TIGRFAM PPR: pentatricopeptide repeat domain 517 546 IPR002885 -
Lele13g0762 700 TIGRFAM PPR: pentatricopeptide repeat domain 341 371 IPR002885 -
Lele13g0762 700 TIGRFAM PPR: pentatricopeptide repeat domain 375 407 IPR002885 -
Lele13g0762 700 FunFam Heat stress transcription factor A-6b 25 127 - -
Lele13g0762 700 Gene3D - 26 127 IPR036388 -
Lele13g0762 700 SUPERFAMILY TPR-like 325 504 IPR011990 GO:0005515
Lele13g0762 700 SMART hsfneu3 28 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele13g0762 700 Pfam PPR repeat family 374 418 IPR002885 -
Lele13g0762 700 PANTHER OS12G0527900 PROTEIN 171 687 - -
Lele13g0762 700 ProSiteProfiles TPR repeat profile. 584 617 IPR019734 GO:0005515
Lele13g0762 700 Gene3D Tetratricopeptide repeat domain 258 372 IPR011990 GO:0005515
Lele13g0762 700 Gene3D Tetratricopeptide repeat domain 614 696 IPR011990 GO:0005515
Lele13g0762 700 Pfam PPR repeat 554 579 IPR002885 -
Lele13g0762 700 Pfam PPR repeat 341 370 IPR002885 -
Lele13g0762 700 Pfam PPR repeat 517 544 IPR002885 -
Lele13g0762 700 Pfam PPR repeat 482 504 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0762 Lele-ChrLele13 19507514 19514046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0762 191 663 EF-hand Containing Proteins AT1G02150 33.264 9.75e-83 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele13g0762 HSF_DNA-bind 3.5e-28 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0762 13 19507514 19514046 Lele13g0762 13 19507514 19514046 ECH
Lele13g0762 13 19507514 19514046 Lele14g0649 14 17848808 17850967 ECH
Lele13g0762 13 19507514 19514046 Lele15g1721 15 10294014 10299108 hybridization
Lele13g0762 13 19507514 19514046 Lele16g1760 16 10303011 10305158 hybridization