Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0757 ATGGAACTCAGCAGGCTCTTCATTTCCGTGAAGAAACCCCCAAACCTCTTTGCCAAACCCTGCTTCGCGTTCTACAACCCGTCCGAGTCGAAATCAATAGTGGAACAAGTCGCACTGTCTCGCACCCTCCAAACCGAGACTCTCAAGACCCTGGAATGGAACTCCGTCTGCAAGAAGCTCTCGAAGTTCACGTCGACATCCATGGGCTTCTCCGTCGCGCAAAGTGCACAAGTGCCCATAGGTCGCACCCAGAAGGAGAGCCAGAAACTTCTCGATCAGACTTCCGCGGCAAGGCTGATTCCTCGACCGATTGACTTTTCTGGTATCGATGACTTGACAGATATTGTCAATGTTGCAACTTCGGGTCAGCTTTTAACGATCAGGGAGCTCTGTACGGTTTGTCGCACGCTGCGTGCTGCAAGAGGGTTGTTCAATAAGTTGCAGGAGTTGAGTTCAGTTGGTAGTTCTTCAGAAAGGTACTTGCCTCTACTTGAAATATTGCAGAATTGTGATTTCCTAGTCGAGTTGGCGAATAAAATAGAGTTTTGCATAGATTGCAATTTTTCTGTAATTCTTGATAGAGCAAGTGAAGACCTAGAAATCATTAGATCAGAAAGAAAGAGGAACATGGAAGTTTTAGATTCTTTGTTAAAAGAAGTATCATTAGAAATTTTTAAGGCTGGGGGCATTGACAAACCATTAATTACACAACGTCGATCCAGGATGTGTGTGGGTGTCAAGGCTTCTCATAGATATCTGGTACCAGATGGTGTAGTTCTGAATGTTAGCAGTTCAGGGGCAACATATTTTATGGAACCCAAAGATGCAATAGATCTGAACAACATGGAAGTAAGGCTTTCAAACTCTGAGAAGGCTGAGGAAAGAGCAATTTTGAGCTTGCTTGCCTCTGAGATAGCAAATTCAGAAGGGAAAATCAAGTACTTATTAGATAAAATTCTCGAAGTTGACCTTGCTTTTGCAAGGGCTGCCTATGCTCAATGGATGGATGGGAAATGTCCAATTTTCGGTTTGGGGAATTTTGAAGGTGGTGATTATAATGAAGAGGATGAAACTTTAATGATTGATATTGATGGTCTACAACATCCCTTACTTTTGGAGGCCTCTCTAGATAGATTTTCAGACAATCTTGATCAGATATCAGGAAATGCCAATGAGTTGGCTAATAAAAATGCTGTAGCGGATTCTAGAAATTTGTTACCAGCCATGGATGACTTTCCTGTACCAGTTGACTTTAAAATTGGTCGTGGAACCAGAGTGGTAGTGATCTCAGGACCTAATACTGGAGGGAAAACTGCTTCCATGAAAAATTTAGGCCTGACATCTCTCATGTCAAAATCTGGAATGCATTTGCCTGCAAAGAGCTCTCCCAAACTTCCTTGGTTTGACCTTGTATTGGCAGATATTGGGGATTATCAGTCCCTAGAACAAAATCTCTCAACTTTTAGTGGGCATATCTCACGAATCTGTAAAATTTTGGAAGTGGCCTCAAAACAGTCACTTGTTGTCATTGATGAAATTGGCAGTGGCACTGATCCTTCTGAAGGTGTAGCTCTTTCTTCTAGTATCTTGCAATATCTGAAGGATCGGGTAAACTTAGCTGTTGTGACTACGCATTATGCGGATCTGAGTTGTCTAAAAGAGAAGGATAACCGTTTTGACAATGCAGCGATGGAATTTTCTCCAGAAACATTACAACCTACTTATAAGATTTTATGGGGACGTACTGGTGATTCAAATGCATTAAGCATAGCTAAATCAATAAGCTTTGATAATAATATAATTGAAGGTGCCAAAAAATGGGTGGAGAAGTTAAAGCCAGAACAACAAGAAGAGCGAAGAGGAATGTTGTACCACTCTCTGCAGGAGGAAAGAAACCGATTGAAAGCCCAGGCTGAAAGGGTTGCATCTGTTCGAGCTGAAATTTTGAATATATACAATGAGATCCAAGAGGAAGCAGAAGATCTTGAGAGACGTGAGATGGCTCTTATGGCCAAGGGAACTCAACAGGTCCAACAAGAGCTATTGGATGCAAAATCTCAGATGGAAACTATAATAAAAAAGTTTGAAAAACAACTCAGAACTGCTGGTCGTGATCAATTGAATTCCTTAATTAAGGAATCTGAATCTGCAATTGCCTCCATTGTAAAAGCTCATGCACCTTCTGTCAATTTTCCTGGTAATGACGCTGATCAGACTCCATATACACCGCAATTTGGAGAACAAGTTCAAGTTGAGGGACTAGGAGGGAAATTAGCCACAGTGGTGGAAAAGCCAGGGGATGATGAAACGATCCTGGTACAATATGGTAAAGTGAAGGTCCGCGTGAAGAAAAGTAGAATCAGAGCTATTCATTCTGATGGAAAGAATTCCATATCTAGTTCTGTCGCACATCAGGGGAAGCAGTATCGGCAGAAGAGAGAATTCCGCAGTAACTTAGAGAGCATCAACAGTGGAGAGCCTTCTTATGGGCCAGTGGTGCAGACATCGAAGAACACAGTGGACTTAAGAGGTATGCGGGTGGAAGAAGCTGCTATACAGCTTGAGATGGCAATAAACGCAAGCCGTCCATATTCGGTGCTGTTTGTTGTACACGGGATGGGAACTGGTGCAGTTAAGGAGCGTGCACTTGAGATACTGAGAAATCATGCAAGAGTCACTAATCATGAGCCAGAAAATCCTATGAATGATGGTTGTACTGTTGCTTATATCAAGTAA 2736 0.4229 MELSRLFISVKKPPNLFAKPCFAFYNPSESKSIVEQVALSRTLQTETLKTLEWNSVCKKLSKFTSTSMGFSVAQSAQVPIGRTQKESQKLLDQTSAARLIPRPIDFSGIDDLTDIVNVATSGQLLTIRELCTVCRTLRAARGLFNKLQELSSVGSSSERYLPLLEILQNCDFLVELANKIEFCIDCNFSVILDRASEDLEIIRSERKRNMEVLDSLLKEVSLEIFKAGGIDKPLITQRRSRMCVGVKASHRYLVPDGVVLNVSSSGATYFMEPKDAIDLNNMEVRLSNSEKAEERAILSLLASEIANSEGKIKYLLDKILEVDLAFARAAYAQWMDGKCPIFGLGNFEGGDYNEEDETLMIDIDGLQHPLLLEASLDRFSDNLDQISGNANELANKNAVADSRNLLPAMDDFPVPVDFKIGRGTRVVVISGPNTGGKTASMKNLGLTSLMSKSGMHLPAKSSPKLPWFDLVLADIGDYQSLEQNLSTFSGHISRICKILEVASKQSLVVIDEIGSGTDPSEGVALSSSILQYLKDRVNLAVVTTHYADLSCLKEKDNRFDNAAMEFSPETLQPTYKILWGRTGDSNALSIAKSISFDNNIIEGAKKWVEKLKPEQQEERRGMLYHSLQEERNRLKAQAERVASVRAEILNIYNEIQEEAEDLERREMALMAKGTQQVQQELLDAKSQMETIIKKFEKQLRTAGRDQLNSLIKESESAIASIVKAHAPSVNFPGNDADQTPYTPQFGEQVQVEGLGGKLATVVEKPGDDETILVQYGKVKVRVKKSRIRAIHSDGKNSISSSVAHQGKQYRQKREFRSNLESINSGEPSYGPVVQTSKNTVDLRGMRVEEAAIQLEMAINASRPYSVLFVVHGMGTGAVKERALEILRNHARVTNHEPENPMNDGCTVAYIK 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0757 911 Coils Coil 376 396 - -
Lele13g0757 911 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 40 683 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Lele13g0757 911 FunFam Endonuclease MutS2 830 911 - -
Lele13g0757 911 Gene3D - 355 699 IPR027417 -
Lele13g0757 911 SUPERFAMILY DNA repair protein MutS, domain III 106 335 IPR036187 -
Lele13g0757 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 404 612 IPR027417 -
Lele13g0757 911 SMART mutATP5 424 609 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lele13g0757 911 Pfam MutS2 and Smr-associated SH3 domain 746 787 IPR046893 -
Lele13g0757 911 Pfam Smr domain 840 909 IPR002625 -
Lele13g0757 911 SMART DNAend 51 374 IPR007696 GO:0005524|GO:0006298|GO:0030983
Lele13g0757 911 FunFam DNA mismatch repair protein MutS type 2 355 699 - -
Lele13g0757 911 Pfam MutS domain V 427 611 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lele13g0757 911 ProSitePatterns DNA mismatch repair proteins mutS family signature. 506 522 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lele13g0757 911 SMART SMR_2 837 911 IPR002625 -
Lele13g0757 911 Gene3D - 832 911 IPR036063 -
Lele13g0757 911 ProSiteProfiles Smr domain profile. 840 911 IPR002625 -
Lele13g0757 911 Coils Coil 624 672 - -
Lele13g0757 911 PIRSF MutS_YshD 40 911 IPR005747 GO:0004519|GO:0016887|GO:0030983|GO:0045910
Lele13g0757 911 SUPERFAMILY SMR domain-like 838 910 IPR036063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0757 Lele-ChrLele13 19483280 19488051 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0757 13 19483280 19488051 Lele14g0637 14 17774222 17785923 CCT
Lele13g0757 13 19483280 19488051 Lele15g1734 15 10387597 10399732 CCT
Lele13g0757 13 19483280 19488051 Lele16g1772 16 10395349 10409105 CCT
Lele13g0757 13 19483280 19488051 Lele15g1725 15 10318714 10328343 hybridization