Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0751 ATGTACATAGCTTCCATGCGAAAGTCTTTCAAGGACTCCTTGAAAGTGCTTGAAGCTGATATCCAGCATGCCAATACCCTGGCATCCGATTTTCCGAGGGAGTATGATGGTGCATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACCTGTTTCTTTTTTTAGTGCAATGGACGGACTGTAATCTTGCAGGAGTCCTTGGGCTGCTAAGAATCCTAATTTACAAGGTTTACGTGGATGGCACAACGACCATGTCTACTCAAGAAAGAAAAGCAAGTATTAGAGAATTCTATGCGGTCATATATCCATCTTTATTGCAACTTCAGAAAGGTGTCACTGATACAGAGGATAAAAAACAAAAGGCTGTATGCATGGAGCGGTATCGAAGGAGAGATGATGAGGAACATAGGCAATCTTCAGATGTTGACATTGAAAGAGATGAAGAATGTGGCATATGCATGGAGATGAACAGTAAGGTTGTGTTGCCCAACTGCAACCATGCAATGTGCTTGAAATGCTACCGTGAATGGAGAACAAGGTCACAGTCATGCCCCTTCTGCAGGGACAGCCTGAAGAGGGTGAACTCGTGCGATCTCTGGGTATTCACCGATAGTAGAGACGTAGTAGATATGGCTACGGTGATGAGGGAGAATCTTAGGAGGCTTTTCATGTACATAGACAAGTTGCCTCTAATTGTTCCAGAATCCCTTTTTGACCCGTATGACTCTCACCTCAGATAA 744 0.4409 MYIASMRKSFKDSLKVLEADIQHANTLASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCNLAGVLGLLRILIYKVYVDGTTTMSTQERKASIREFYAVIYPSLLQLQKGVTDTEDKKQKAVCMERYRRRDDEEHRQSSDVDIERDEECGICMEMNSKVVLPNCNHAMCLKCYREWRTRSQSCPFCRDSLKRVNSCDLWVFTDSRDVVDMATVMRENLRRLFMYIDKLPLIVPESLFDPYDSHLR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0751 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 199 IPR013083 -
Lele13g0751 247 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
Lele13g0751 247 SUPERFAMILY RING/U-box 140 194 - -
Lele13g0751 247 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Lele13g0751 247 PANTHER RING FINGER PROTEIN 41, 151 8 245 - -
Lele13g0751 247 SMART ring_2 151 188 IPR001841 -
Lele13g0751 247 FunFam RING/U-box superfamily protein 129 198 - -
Lele13g0751 247 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0751 Lele-ChrLele13 19445701 19449109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0751 122 189 Glycosyltransferase AT5G37200 32.877 3.43e-06 45.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g0637 14 17774222 17785923 Lele13g0751 13 19445701 19449109 CCT
Lele15g1734 15 10387597 10399732 Lele13g0751 13 19445701 19449109 CCT
Lele16g1772 16 10395349 10409105 Lele13g0751 13 19445701 19449109 CCT
Lele13g0751 13 19445701 19449109 Lele15g1728 15 10343530 10346905 hybridization
Lele13g0751 13 19445701 19449109 Lele16g1767 16 10341994 10344460 hybridization