Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0747 ATGTCTGACGCTGAAAATCAAACCTCTTTGAAAGATGGCGATCGTCTTAGTTCAAAGCCTGACAGGGGCTACCGCGACAAGCCCAATTCTCATGGATCTGATCACGAGAGGCAAAGGATGAGAAAGCGAGATGGAGAGAGGGAAACTTATCATGTACACCATCACAAGGACTCTAAAAATGGAGGCTTTAGAAGAAAAGGCAGTAATGACAATTATAATCGTCATCAGAACTGTGATTATGACAGGTATCGAGGTCATGTACGAGATGGAGAAATGAGGCACAGATATGGAAGACGATCAAGTTACAGATCCAAGAGGGAATCTAGATCTCGCTCCAGATCCCCCCCTCATTCAGAAAGCAAAAGGATAAGTGGTTTTGACATGGCACCACCTTCTGTTGCTGGAGCACCTGCTGCTGCGGTTGATAGTGCAGGGCAAATGCTGGGGACCACACATCCAGTAACTCTGCAGACTGTGCCATCATTTGGGATGTCACAGGTTGGATCTCTTCCATTGATGTCAGTTCAACCTATGATGCAGCAGGCTACAAGGCATGCACGACGAGTTTATGTTGGTGGGCTCCCCCCTTTTACTAATGAGCAGGCAGTTGCAGCATTCTTCAGTCATGTTATGGTAGCCATTGGAGGGAATTCTGCTGGTGCAGGTGATTCTGTTGTCAATGTATACATTAACCACGAGAAGAAATTTGCCTTTGTGGAGATGAGAACCGTTGAAGAAGCTAGCAATGCAATGGCATTAGATGGAATTATATTTGAGGGAGTTGCTGTGCGGGTTCGCAGGCCTACAGACTATAATCCTTCAGTAGCTGCTGCTCTAGGTCCGAGCCAACCAAGTCCAAATCTTAACTTATCTGCTGTTGGGCTTGTTGCAGGTGCAATTGGCGGAAATGAGGGACCTGATCGCATCTTTGTTGGTGGGCTACCATACTACTTTACTGAAGAACAAATAAAAGAATTGCTCCAAGCTTTTGGACCTCTCAGAGCGTTTGATCTAGTTAGAGATAAAGACACCGGAAATTCTAAAGGATATGGTTTCTGCTTCTATCAGGATCCAGCTGTAACGGACATTGCTTGTGCCTCTCTGAATGGCCTTAAAATGGGTGACAAAACACTGACTGTTCGGCGTGCCACAGTCTGTGTACAGTCTAAAACAGAACAGGAGAATATCTTTGTACAGGCACAACAGCATATTGCTATTCAGAGAATAGCCATGGAAGCTGGTGGGCTAAATATTCCAGGAGTGGAAAGAGCATTAACCAATCTTAATGAAAATGCTACCAAAGTTTTATGCTTGACTGAGGCCATTACTGCTGATCAACTAAGGGATGATGAAGAGTATGGAGAAATATTGGAAGACATGCGGGATGAATGCAGCAAATTTGGGACCTTGATAAATGTTGTTATCCCTCGTCCAAATGGCATCGGTGAGGCTTCCCCAGGTGTTGGAAAGGTGTTCTTGGAATATTCTGATAGTAGTGGAAGTTTGGCTGCAAAAAATGCACTGAATGGGAGGAAATTCGGAGGCAATGTTGTGAGCGCCTTCTGTTATTCCGAAGAAAAATATCATAACATGCAGTATGATGATGTATAA 1611 0.4451 MSDAENQTSLKDGDRLSSKPDRGYRDKPNSHGSDHERQRMRKRDGERETYHVHHHKDSKNGGFRRKGSNDNYNRHQNCDYDRYRGHVRDGEMRHRYGRRSSYRSKRESRSRSRSPPHSESKRISGFDMAPPSVAGAPAAAVDSAGQMLGTTHPVTLQTVPSFGMSQVGSLPLMSVQPMMQQATRHARRVYVGGLPPFTNEQAVAAFFSHVMVAIGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPSVAAALGPSQPSPNLNLSAVGLVAGAIGGNEGPDRIFVGGLPYYFTEEQIKELLQAFGPLRAFDLVRDKDTGNSKGYGFCFYQDPAVTDIACASLNGLKMGDKTLTVRRATVCVQSKTEQENIFVQAQQHIAIQRIAMEAGGLNIPGVERALTNLNENATKVLCLTEAITADQLRDDEEYGEILEDMRDECSKFGTLINVVIPRPNGIGEASPGVGKVFLEYSDSSGSLAAKNALNGRKFGGNVVSAFCYSEEKYHNMQYDDV 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0747 536 MobiDBLite consensus disorder prediction 1 136 - -
Lele13g0747 536 FunFam U2 snRNP auxiliary factor large subunit 284 396 - -
Lele13g0747 536 SUPERFAMILY RNA-binding domain, RBD 308 524 IPR035979 GO:0003676
Lele13g0747 536 SUPERFAMILY RNA-binding domain, RBD 69 267 IPR035979 GO:0003676
Lele13g0747 536 Gene3D - 429 534 IPR012677 -
Lele13g0747 536 TIGRFAM U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor 24 533 IPR006529 GO:0003723|GO:0005634|GO:0006397
Lele13g0747 536 CDD RRM3_U2AF65 433 520 - -
Lele13g0747 536 FunFam U2 snRNP auxiliary factor large subunit 430 534 - -
Lele13g0747 536 FunFam U2 snRNP auxiliary factor large subunit 182 283 - -
Lele13g0747 536 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 378 IPR000504 GO:0003723
Lele13g0747 536 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 458 518 IPR000504 GO:0003723
Lele13g0747 536 Gene3D - 300 403 IPR012677 -
Lele13g0747 536 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 385 IPR000504 GO:0003723
Lele13g0747 536 MobiDBLite consensus disorder prediction 8 97 - -
Lele13g0747 536 CDD RRM2_U2AF65 307 383 - -
Lele13g0747 536 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 270 IPR000504 GO:0003723
Lele13g0747 536 PANTHER RNA-BINDING PROTEIN 17 533 - -
Lele13g0747 536 Gene3D - 182 283 IPR012677 -
Lele13g0747 536 SMART rrm1_1 308 381 IPR000504 GO:0003723
Lele13g0747 536 SMART rrm1_1 441 521 IPR000504 GO:0003723
Lele13g0747 536 SMART rrm1_1 188 266 IPR000504 GO:0003723
Lele13g0747 536 CDD RRM1_U2AF65 186 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0747 Lele-ChrLele13 19410034 19417502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0747 309 514 Eukaryotic Initiation Factors Gene Family AT1G22760 25.604 8.17e-08 53.1