Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0711 ATGGCGGACGAGGGGTATGATTACTCGGAACTGGTTGACGGAGGTGCTGATGCGGATGATAAGTTTTTTATAGATCTTGACACCTTTATGAATGTCCTCGATGAGGATTGTGATCCTTCGGAGACTTCAATTGGTTTATTCTACTTTTCAGGAAATTCTGTGCTTTTCTGTGATCATGAAAATCAAGGACCTCCTTCGCAGACTTGCTCTTCCTCTCATGCTGTCCCTGATGGTTTTCAGCAGTTAGATCCTCATGATGGAAGTAATGAAATTTACTACACAGAAAGGGAAGGAACTTCAGGATGTGAGATGCCAGCCCAATCTTTGGAACCCAGTGTCCCTGAACCACATTTCAACAATATATCGGTTTGTGGAGATAATTTGAGTTTGAATCCTCTCTGGAAGGAAAAATATGAGAACCAACTCAAGCATGTGGGAGAGGATGTTAAATCTGAATATGCTTCATACAGCCCTATCATTGAGAATGGTGATGTAAGTTTGGCACAATATAGAGCTTTTGATGAAGATATGTGTGAAGGCGTTTCTGGGCAACTGGAAACTGACTCGTGTACATCTTTTGAAATATCATTCATGGATGCTAATGGAGGTTCACATATGGCAACATCAACCAATTCTACTATTTGCCAAGGCTCCAATGCTCTTAGTGATTCTTGTGACTACTTTTCATCCTTGCATGGTTGTAAGGGTACAGATGATAGATTTCTAGCTTCTGACTTGTCTCTTTCTTCTTATTTGCCTAATGTTTTTGGCTCTCAATTTTTGCCAAATCAAGAAATACTGGATAATGTGAAGGGTGAAAACGTGGAATATGTGGGTGATGCCTCATATGTGAGTAGTAACATGCATTCCAGCTCTACTGGTGGGATTCCTTTTCAAGATAATCTATTTATATCAGCAGATAGTGAATTTTCTTCATTTTTTCCTGGCAATGCTTCATACTTTCCCGGTGAAGACCAAGTAGTTTGTGTCAAAGGTGAAAGAGATGAACCAATTGCACCTTACCAGAACTCTCTTTACGAAGAGTACTCTGAGTTTAATGTAGGCCAAGGTATGAATCACTTAAATGGAGGCCTAGAGAATAATCCTTTAAATAGTTCTTTTCCTTCCATGGGAGATCATAGTTTTAATTTGTTAGAGAGTGAGGATAAAAATGCTGATATATTATCGAACATACATCATCATTATAAAGAGATGATTGATGGTACTAGCTGTAAATTTCCAAGAGACACAGCTAATTTGAACAGACAAGCGTTAGACAAATCTTTGCCCTATGCCAAGGCATCAATTATTACTCAGAAGCAGTTTGGTTATGTTAAGAATGAAGGAGAGGGAAAAATGATTCAATGTAGGAATTTTGATTCGCACTTTTCAAAAGCTGGGACTGAATTGGTTCACAGAAGTTTTTCAGAGAAATCCCATATTGAGGATGATGACTCCGATGTCTGTGTGATTGAAAGCATTAGTCATCCCGCACCGACAAATCGATCAACAGACCATCAGAATTCCCATAAGGTATTGAAATACTCTTCATATGGTGATTCACAACCTTACATGTCAAGCACAAGGCCGAAGGCCTGTGATGAGCAGTATATATTGCGAGTTGCGCTACAGGATTTATCTCAGCCAAAGTCAGAAGTTATACCTCCAGATGGGTTGATGGCTGTTCCTCTATTAAGACATCAGAGAATTGCTTTGTCATGGATGGTTCAAAAGGAAACATCAAGTTTATACTGCTCAGGGGGGATCCTTGCAGATGATCAGGGACTTGGAAAAACAGTATCGACTATTGCTTTGATACTGAAGGAAAGACATCCAGCACTAATAGCTTGTAGCAATGCACAAAAGGGGGAATTAGAAACTTTGAATCTGGATGTCGATGATGATGTTCTTGCTGAGGGTGGTGGAGTGAATGAAGATAAGCCTAGTGCAAGTCCGATTGAAAACAAGAATTTGTCAATGCAAACAAAGGGAAGGCCATCTGCAGGAACACTTATTGTTTGTCCCACTAGTGTCCTACGGCAATGGGCTGAAGAGTTGCAAAATAAGGTGACTAGCAAAGCAAACCTCTCTGTGCTAGTGTACCATGGAAGCAATCGAACAAAAGATCCGTATATTCTAGCCAAGTATGATGTTGTTCTGACAACTTATTCAATTGTCAGCATGGAGGTACCTAAGCAGCCTCTGGTTGACAAAGATGATGAAGAGAAAGGAAATTCTGAAGTTAATGCTGGTCTACCATCTTGTAAGAAAAGGAAATGCCCTCCTTCTAGTAAAAGTGGCAAGAAGGGATTAGACCGTGCTTTGCTTGAGGCTTCTGCTCGCCCTTTAGCAAAAGTGGCTTGGTTTAGAGTTGTCTTGGATGAGGCCCAGAGTATAAAGAATCACAGGACTCAAGTTGCAAGGGCCTGCTGGGGTCTTCGTGCGAAGCGAAGATGGTGCTTGTCTGGGACTCCTATCCAGAATGCTATTGATGATCTTTATAGTTATTTTAGATTTCTCAGATATGACCCTTATGCTGTTTATAATACATTCTGCTCTACTATTAAGATTCCAATCAACAGAAATCCGAACAAAGGGTATAGAAAGCTGCAAGCTGTCTTAAAGACAATAATGTTACGCCGGACAAAAGGCACACTTCTTGATGGAGAACCTATTATTACACTGCCACCGAAATATGTGAAGCTCAAAAAAGTGGATTTTTCAAGAGAGGAGCGTGATTTCTATTCCAGACTGGAAGCTGATTCTCGTGCACAGTTTCAGGAATATGCCAAGGCTGGAACTGTCAAGGAAAATTATGTCAATATTCTGTTGATGCTTTTACGCCTTCGACAAGCTTGTGATCATCCTCTACTTGTTAAGCGCTACAATTCTAACACACTATGGAGATCTTCAGTTGAGATGGCAAAGAAACTTCCTTGGGAAAAACGAACATCACTTCTGAAATGTTTGGAGGCTTCCTTGGCTCTTTGTGGCATCTGTAATGATCCTCCTGAAGATGCAGTTGTTTCAGCTTGTGGTCATGTTTTTTGTAACCAGTGTATTTGTGAACATCTCACTGGTGATGACAATCAGTGCCCTACTACAAATTGCAAAGCTCAATTGAGTATGTCTTCGGTGTTTTCGAGAGACACATTGAGCTGTTCTCTTTCTGACCAGGCTAGTGATAGTGTGGTTGGTTGCTCTGGTTCTGAAGTGGAGGGTTATGAGCCTTGTTCTCAGAGTCAGCCATCTGATTCTTCAAAAATTAAGGCCGCTCTTGAGGTATTGAGCTCATTGTGTAAGCCACAGGTTGATGCATCAAGAAGTATTTCAATGCAGATTAATTCTGATGAACATAGTGACTGCCATGGGAATTCCTCTGATGCCAACAAGGTGAAATCCTTCAAGGATTTTCCTGAGAGTCAAAAAGTGTCGGATGGAAGCTCTGATGATTCAGTTGTTAGAGAGAAAGCTATTGTATTTTCTCAGTGGACAAGGATGTTGGATTTGCTTGAAGCATGCCTTAAGAATTCTTCAATTCAGTATAGGAGGCTTGATGGCACAATGTCAGTTGTTGCTAGGGATAAAGCTGTTAAAGATTTTAATACTCTCCCAGAGGTAACAGTTATGATTATGTCTTTGAAAGCTGCCAGTCTTGGCCTCAACATGGTAGCTGCCTGCCATGTACTTATGCTTGATCTATGGTGGAATCCTACAACAGAAGATCAAGCAATTGACAGAGCGCATCGAATTGGGCAGACTCGCCCTGTAACTGTTTTACGGCTGACTGTGAGAGATACGGTTGAAGATCGTATTTTAGCTCTACAGCAAAAGAAGCGGAAGGTGGTTGCATCTGCATTTGGGGAAGATGAAACTGGCGATCGTCAAAGTCGCCTCACAGTGGATGATTTAAAATACTTACTTGTACAAGAGATCAGGGGCAGGAACAATGGCCCAGGTGGGAAAAAATCTAGCCAGAAAAGTAAAAATCTGAGGAATTGGCCATCTGGGTCTGACATTGTTGGCGATTTTGCACATGGGTGCAGCCAATATCACGCCGTCGAACCCTTTTGGATCGGCCAAAGGGATGAGGAGGCAGATCGCGCCGCCCATGGACTCGCCGTAGAGGAAACGAGGCAAGCCCTGAAAGTTCGGGTCTTGCTTGACGGATCCGAAGAAGGAGAGGCAATCCTGGACGACGATATCGACATTAGGAACGAAGGCCTTGAGGCCTTAAGATCGGCCATGGCCTTGGAGGTCGAGAGCGAAACAGGCGAAACCCATCTGAGCGAGGAAGATTGCAGTGGCTTGGAAGGTCCAGCTGATGTCGTTGTCGTAACCGTGGACCATGAAGACGACGGCGTGGACGGGAAGCCCTGA 4380 0.4231 MADEGYDYSELVDGGADADDKFFIDLDTFMNVLDEDCDPSETSIGLFYFSGNSVLFCDHENQGPPSQTCSSSHAVPDGFQQLDPHDGSNEIYYTEREGTSGCEMPAQSLEPSVPEPHFNNISVCGDNLSLNPLWKEKYENQLKHVGEDVKSEYASYSPIIENGDVSLAQYRAFDEDMCEGVSGQLETDSCTSFEISFMDANGGSHMATSTNSTICQGSNALSDSCDYFSSLHGCKGTDDRFLASDLSLSSYLPNVFGSQFLPNQEILDNVKGENVEYVGDASYVSSNMHSSSTGGIPFQDNLFISADSEFSSFFPGNASYFPGEDQVVCVKGERDEPIAPYQNSLYEEYSEFNVGQGMNHLNGGLENNPLNSSFPSMGDHSFNLLESEDKNADILSNIHHHYKEMIDGTSCKFPRDTANLNRQALDKSLPYAKASIITQKQFGYVKNEGEGKMIQCRNFDSHFSKAGTELVHRSFSEKSHIEDDDSDVCVIESISHPAPTNRSTDHQNSHKVLKYSSYGDSQPYMSSTRPKACDEQYILRVALQDLSQPKSEVIPPDGLMAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERHPALIACSNAQKGELETLNLDVDDDVLAEGGGVNEDKPSASPIENKNLSMQTKGRPSAGTLIVCPTSVLRQWAEELQNKVTSKANLSVLVYHGSNRTKDPYILAKYDVVLTTYSIVSMEVPKQPLVDKDDEEKGNSEVNAGLPSCKKRKCPPSSKSGKKGLDRALLEASARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYNTFCSTIKIPINRNPNKGYRKLQAVLKTIMLRRTKGTLLDGEPIITLPPKYVKLKKVDFSREERDFYSRLEADSRAQFQEYAKAGTVKENYVNILLMLLRLRQACDHPLLVKRYNSNTLWRSSVEMAKKLPWEKRTSLLKCLEASLALCGICNDPPEDAVVSACGHVFCNQCICEHLTGDDNQCPTTNCKAQLSMSSVFSRDTLSCSLSDQASDSVVGCSGSEVEGYEPCSQSQPSDSSKIKAALEVLSSLCKPQVDASRSISMQINSDEHSDCHGNSSDANKVKSFKDFPESQKVSDGSSDDSVVREKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVVARDKAVKDFNTLPEVTVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKVVASAFGEDETGDRQSRLTVDDLKYLLVQEIRGRNNGPGGKKSSQKSKNLRNWPSGSDIVGDFAHGCSQYHAVEPFWIGQRDEEADRAAHGLAVEETRQALKVRVLLDGSEEGEAILDDDIDIRNEGLEALRSAMALEVESETGETHLSEEDCSGLEGPADVVVVTVDHEDDGVDGKP 1459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0711 1459 SMART ring_2 997 1035 IPR001841 -
Lele13g0711 1459 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 579 843 IPR014001 -
Lele13g0711 1459 SMART ultradead3 560 858 IPR014001 -
Lele13g0711 1459 MobiDBLite consensus disorder prediction 650 664 - -
Lele13g0711 1459 Gene3D - 653 739 IPR038718 -
Lele13g0711 1459 Gene3D - 540 626 IPR038718 -
Lele13g0711 1459 Gene3D - 771 893 IPR038718 -
Lele13g0711 1459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 990 1048 IPR013083 -
Lele13g0711 1459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 889 1308 IPR027417 -
Lele13g0711 1459 MobiDBLite consensus disorder prediction 1319 1335 - -
Lele13g0711 1459 Pfam Zinc finger, C3HC4 type (RING finger) 997 1034 - -
Lele13g0711 1459 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 441 1308 - -
Lele13g0711 1459 Pfam Helicase conserved C-terminal domain 1152 1252 IPR001650 -
Lele13g0711 1459 Pfam SNF2-related domain 584 958 IPR000330 GO:0005524|GO:0140658
Lele13g0711 1459 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1148 1300 IPR001650 -
Lele13g0711 1459 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 653 739 - -
Lele13g0711 1459 ProSitePatterns Zinc finger RING-type signature. 1012 1021 IPR017907 -
Lele13g0711 1459 MobiDBLite consensus disorder prediction 641 664 - -
Lele13g0711 1459 MobiDBLite consensus disorder prediction 736 771 - -
Lele13g0711 1459 MobiDBLite consensus disorder prediction 1314 1336 - -
Lele13g0711 1459 SUPERFAMILY RING/U-box 994 1041 - -
Lele13g0711 1459 SMART helicmild6 1169 1252 IPR001650 -
Lele13g0711 1459 CDD SF2_C_SNF 1155 1262 - -
Lele13g0711 1459 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 763 893 - -
Lele13g0711 1459 CDD DEXDc_SHPRH-like 564 881 - -
Lele13g0711 1459 Gene3D - 896 1331 IPR027417 -
Lele13g0711 1459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 548 881 IPR027417 -
Lele13g0711 1459 ProSiteProfiles Zinc finger RING-type profile. 997 1036 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0711 Lele-ChrLele13 19129846 19140050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0711 448 1309 RAD5 or RAD16-like Gene Family AT1G61140 59.818 0.0 971
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele13g0711 SNF2_N 7.4e-70 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0706 13 19096834 19097718 Lele13g0711 13 19129846 19140050 CCT
Lele14g0603 14 17506180 17507046 Lele13g0711 13 19129846 19140050 CCT
Lele15g1776 15 10717805 10718683 Lele13g0711 13 19129846 19140050 CCT
Lele16g1808 16 10684273 10685139 Lele13g0711 13 19129846 19140050 CCT
Lele13g0711 13 19129846 19140050 Lele14g0601 14 17484312 17486554 CCT
Lele13g0711 13 19129846 19140050 Lele16g1810 16 10707624 10709850 CCT
Lele13g0711 13 19129846 19140050 Lele15g1771 15 10677334 10685472 hybridization
Lele13g0711 13 19129846 19140050 Lele16g1803 16 10640970 10649345 hybridization