Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0689 ATGGCCACGGTTGGGTCTTCTTCTTCCTCGTCGAAGGTCTGCTACAATTCGGACTGCAAAGAATTGAAGTCAGACAGACCTAAGAGGGGTTGGAGACTCCGTACTGGAGACTTCGCTGAGCTCTGTGATCGATGCGGTTCTGCTTTTGAGGAAGGAAGGTTCTGTGAAGTTTATCACTCAAAAGCTTCTGGTTGGAGGACTTGTGAGTCATGTGGGAAGGGGATTCATTGTGGGTGTATTGTTTCAAGTACAGCCTTTATGTTGTTGGATCCTGGAGGCATTGAATGCATTCCATGCGCCAGGAAGAATATTATTTTGTCATCTGGTCTGCCTTGGACACCACCTGTTTCTCTTCAAGCTCGTTTTAGAGACCTGACCTCAAAAAATTGGAGTCAGTTAGCTGGATCAGGTCCTGTGCCGTGGAAGCAAGCACCCACTCTGTTCAATACAACTTCATCTGACCGGCACCCAGATGTGCCATCTGTAGTTGAAATATCTAGTGTTGACAATATTTATGGAAATGAAAGGATAGCTGCATCATCTCTGGAAAAGAAAAGTGACGATCTTTCTGGAATACCGGCTAATTGGAATGTAAAGATTGGCGCACGGGAAATGATGTTTATAAATGGAATGCGGAATGATGAAAAGTCTAGTTCATGCTTGAATATGTGCCAGCAACCTTCTCTTAAGGAGGATTCATCGACCCAACCATTTGGTCTGACTGTACCTTATGCACATCAAAATGAAAGAAATGGTCAAATTGGGGTAACTGGAAGTCATCCACAACAAACTCCACCTCCTCACGGAAAGCAATTTAGTGGCCCTGTACATGTTGTGCTTGATTCATCTGGTGAATCACAGGTACGTAACGGACGGCCTAGAGTAGATGCCCGAGGAAGGAACCAGTTACTGCCACGGTACTGGCCGAGGTGCATTGATCAGGAGCTACATCAAATATCTCTTGACTCTAATTCTGTTATAACTCCATTGTTCCAAAAAACGTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTCTAGTGCTACCCAAAAAATGTGCTGAGGCCTACTTTCCACCAATTTCTCAGCCTGAAGGGTTGCCACTTAAAATCCTTGATGCAAAAGGCAAGGAATGGATATTTCAATTTCGCTTTTGGCCCAATAATAATAGTAGAATGTATGTTTTAGAAGGCGTAACTCCATGCATACAGTCCATGCAATTGCAAGCTGGTGACACAGTAACATTTAGTCGGTTGGAGCCAGAGGGGAGGTTGGTTATGGGATTTCGAAAGGCTTCAAGTGCTACCCAATCTGATCAGGACAATGAGACAAACAAGACTGGAAATGGATATTCTACACATGGTGAAGTTGAATTGGATCCTAGTTCATGGTCTAAAGTTGACAAATCAGGATATATAGCAAAAGAAGCACTGGGGAGCAAATCTTCCATTTCTAGGAAGAGAAAGAGTAGTGCTTTGGGTTCAAAGAGTAAGCGACTAAGAATTGAAAATGAGGATCTAATAGAGTTGAATATTACTTGGGAAGAAGCTCAAGGCCTGCTCCGCCCCCCTCCTAACCATGTTCCCAGCATTGTGGTGATTGAAGGTTTTGAATTTGAGGAGTATGAGGATGCTCCAGTGCTGGGGAAACCAACAATTTTCACTACCGACAGTGTTGGTGAAAAGATCCAGTGGGATCAATGTGAAGATTGTCAAAAATGGCGCAAATTGCCAGCTAATGCTCTTCTAACCTCAAGATGGACATGTTCAGATAATCCATGGGACCCAGAAAGATCATGTTCGGCTGCGCAGGAGTTGACAGCAGAACAGCTTGAAGATTTGCTTCCCCCTTGTAATTCAGTTGTATCCAAGAAAATGAAGACCGCCAAGCAGGATCCTGATAATGTCGAAGCTTTGGAAGGACTTGACACTCTTGCTAACTTAGCTATCTTGGGAGAGGGGGAGGCTCTCCCAGCATCTGCCCAAGCCACAACAAAGCACCCTCGGCATAGACCTGGCTGCTCTTGCATTGTTTGCATTCAGCCTCCTAGTGGGAAGGGGCCCAAGCATAAGCAGACTTGCACATGTAATGTTTGCTTAACAGTGAAGCGCCGTTTCCGTACCTTGATGTTACGGCGTGAGAAGAAACAATCAGAGAGAGAAGCAGAGACAACACGTAAAAAGCAGCAGCCCCAGCCACCACAGCCGCCACCAACTATGTCAGAGATATTGCTTGACGATGATTCCCTGCCTTGCAGTAACACAGGAGATAATAGTAGTCCTAATCAGAACAGGGAGGGCAATGAAGGTTCTGATGATGACCCTAACAAGACAAAGTCATCTGCATCGCCATTTAAAGGCCAGATTGACCTCAATATTCAGCCAGAGCGAGAGGAAGAGTTGTCTCCCAGTTCAGATTCTGGAAGCATGATTAAGATGCCCCATAATGCTACAGAGAGGTATCCGAGGCAGCAGAATATGGTGAACTCTTTTGCCGGAGATACTTCAGGTGGACAGTTGCAGCAAGTTGGAGACGACGCGATGGAAGAGAAACTTTGCAATGGGGTAGCCCTTGGCAGTAGTGATCATAATTCTGACATGGAACATGCCCAAACATTGCCCATGAATGTGTGA 2631 0.4538 MATVGSSSSSSKVCYNSDCKELKSDRPKRGWRLRTGDFAELCDRCGSAFEEGRFCEVYHSKASGWRTCESCGKGIHCGCIVSSTAFMLLDPGGIECIPCARKNIILSSGLPWTPPVSLQARFRDLTSKNWSQLAGSGPVPWKQAPTLFNTTSSDRHPDVPSVVEISSVDNIYGNERIAASSLEKKSDDLSGIPANWNVKIGAREMMFINGMRNDEKSSSCLNMCQQPSLKEDSSTQPFGLTVPYAHQNERNGQIGVTGSHPQQTPPPHGKQFSGPVHVVLDSSGESQVRNGRPRVDARGRNQLLPRYWPRCIDQELHQISLDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSATQSDQDNETNKTGNGYSTHGEVELDPSSWSKVDKSGYIAKEALGSKSSISRKRKSSALGSKSKRLRIENEDLIELNITWEEAQGLLRPPPNHVPSIVVIEGFEFEEYEDAPVLGKPTIFTTDSVGEKIQWDQCEDCQKWRKLPANALLTSRWTCSDNPWDPERSCSAAQELTAEQLEDLLPPCNSVVSKKMKTAKQDPDNVEALEGLDTLANLAILGEGEALPASAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEREAETTRKKQQPQPPQPPPTMSEILLDDDSLPCSNTGDNSSPNQNREGNEGSDDDPNKTKSSASPFKGQIDLNIQPEREEELSPSSDSGSMIKMPHNATERYPRQQNMVNSFAGDTSGGQLQQVGDDAMEEKLCNGVALGSSDHNSDMEHAQTLPMNV 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0689 876 MobiDBLite consensus disorder prediction 857 876 - -
Lele13g0689 876 MobiDBLite consensus disorder prediction 750 765 - -
Lele13g0689 876 MobiDBLite consensus disorder prediction 710 809 - -
Lele13g0689 876 MobiDBLite consensus disorder prediction 251 271 - -
Lele13g0689 876 Gene3D - 309 436 IPR015300 -
Lele13g0689 876 MobiDBLite consensus disorder prediction 429 462 - -
Lele13g0689 876 SUPERFAMILY DNA-binding pseudobarrel domain 328 431 IPR015300 -
Lele13g0689 876 MobiDBLite consensus disorder prediction 251 269 - -
Lele13g0689 876 MobiDBLite consensus disorder prediction 430 458 - -
Lele13g0689 876 Pfam CW-type Zinc Finger 564 604 IPR011124 GO:0008270
Lele13g0689 876 Pfam B3 DNA binding domain 331 430 IPR003340 GO:0003677
Lele13g0689 876 MobiDBLite consensus disorder prediction 711 726 - -
Lele13g0689 876 FunFam B3 domain-containing transcription repressor VAL1 309 436 - -
Lele13g0689 876 ProSiteProfiles B3 DNA-binding domain profile. 331 432 IPR003340 GO:0003677
Lele13g0689 876 ProSiteProfiles Zinc finger CW-type profile. 558 607 IPR011124 GO:0008270
Lele13g0689 876 Gene3D - 553 609 - -
Lele13g0689 876 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 11 833 - -
Lele13g0689 876 SMART B3_2 331 432 IPR003340 GO:0003677
Lele13g0689 876 CDD B3_DNA 329 430 IPR003340 GO:0003677
Lele13g0689 876 MobiDBLite consensus disorder prediction 856 876 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0689 Lele-ChrLele13 18953127 18968110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0689 10 715 B3 DNA Binding Superfamily AT4G32010 46.453 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele13g0689 B3 9.5e-16 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0689 13 18953127 18968110 Lele13g0671 13 18803658 18805400 CCT
Lele13g0689 13 18953127 18968110 Lele14g0570 14 17220597 17222342 CCT
Lele13g0689 13 18953127 18968110 Lele15g1813 15 11035205 11036944 CCT
Lele13g0689 13 18953127 18968110 Lele16g1842 16 10981457 10983430 CCT
Lele13g0689 13 18953127 18968110 Lele13g0689 13 18953127 18968110 ECH
Lele13g0689 13 18953127 18968110 Lele15g1794 15 10865001 10874824 hybridization
Lele13g0689 13 18953127 18968110 Lele16g1825 16 10826679 10837868 hybridization