Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0671 ATGGGTGAAGGAGAGGGAGGTAGAAAAGCTATAACAGAACAGGATTGGCCGGAATTGTTCGCCGGAGGTTCCAGTATCCCTCGAGCTGTCAAGCTTATATCTTCCTTGATTTCTCTCTCCCATTCAGTCAGGGTCTTCGCGGCAAAATGGCAACTCATTCGGAACAAGCTTGAGGAGCTCCATTCAGGACTAATCGCCGCCGAGAACGGCGATTCCGGCGAGAACCCGTCGCTCTCTAGTCTGGTTCCTGCGATACTGGCTACAGCGAACGACTGCCATGATCTCGCTCGCCGTTGCGTTGATCTTTCATATAGCGGGAAGCTTCTTATGCAGAGCGATTTGGATGTGATGTTCGCCAGGTTCGCTTCTCACGCGAGGAAGCTATCAGAGGTATACTCAACTGGTATTTTGACTCACAAGTATGCCCTCGTTGTTTCGAGGCCTAGTCTCGGAGCTTGCAAAGATGATATGAGGTTTTACATGAGGGACTTGCTGACGAGAATGAAGATTGGCGATGTGGGAATGAAGAGGCAAGCTCTGATTAATCTGCACGAGGCTGTAACGGAAGACGAAAAGTATGTGAAAGTGATTGTGGAAATAGGAGATATTGTTCATCTTGTGGTAAATTTTCTCGATTCGCCGGAGATGGAAATCCAAGAAGAATCCGCCAAGGTGCTTTCTGTGATCGCCGGCTTTGATTCCTACAGAGGGGTTCTGATCACATCTGGGATTATTGCGCCTCTGATCCGGGTTTTGGAATGTGGGAACGAGTCAGGGAAGATCGGGTCTGCTAGGTGTTTGATGAAATTAACATTCAATTCTGACAATGCCTGGTCGGTTTCAGCTCATGGAGGAGTCACGTGCTTGCTCAAAATCTGCTCTAATGGAGAACCCAAAGGAGAATTGGTCGGTCCTGCTTGTGGGGTACTGAGAAATCTTGTAGGTGTTGAGGAAATAAAGAGATTCATGGTTGAAGAAGGTGCGATTTCTACATTTATCAGGCTTGTGAAATCCAGGGATGAAGCGATTCAGGTAAATTCCATACAATTCATTCAAAGTGTAGCCTCTGGAGATGAACAGGTTAGGGAAATGGTGATTAGAGAAGGTGGAATCCGGGCTTTGTTACGGATTCTAGATCCCAAATGCTCATGTTCTTCCAAAACCCGGGAAATAACAATGAGAGCTATTGAAAACTTGTGTTTTTCTTCATCTAGTTCTGTAAGTATATTAATGAGTTATGGCTTTGTGGATCAACTGCTTTATTATATTCGTAAGGGGGAGGATTCAATCCAAGAATTGGCTCTGAAAGTAGCGTTCAGATTCTGTGGAAGATCAGAGGAAGCTAAGAAAGCCATGGGAGATGCAGGTTTCATGCCAGAGCTTGTTAAGTTTCTAAATGCAAAATCATTTGAAGTTCGTGAAATGGCAGCTGAATCGCTCTCTGCCATGGTTATGGTGCCCAAGAACAGAAAGAAATTTGTGCAGGATGATCAAAACATATCTCTTCTTCTCCAACTTCTTGATCCAGAAGAGGGAAATTCAAGTCACAAGAAGTTCCTAATCTCTATCTTAATGTCATTAACAAGTTGTAACAGTGGGAGAAAAAAGATTGTGAGCTCAGGGTATGCCAAAAACATAGAGAAACTTGCAGAAGCTGAAGTTTCATCAGATGCCAAGAGGCTTGTGAGGAAGCTATCCACAAACAGATTCCGCAGTATGTTGAGTGGAATCTGGCTCTCTTGA 1743 0.4469 MGEGEGGRKAITEQDWPELFAGGSSIPRAVKLISSLISLSHSVRVFAAKWQLIRNKLEELHSGLIAAENGDSGENPSLSSLVPAILATANDCHDLARRCVDLSYSGKLLMQSDLDVMFARFASHARKLSEVYSTGILTHKYALVVSRPSLGACKDDMRFYMRDLLTRMKIGDVGMKRQALINLHEAVTEDEKYVKVIVEIGDIVHLVVNFLDSPEMEIQEESAKVLSVIAGFDSYRGVLITSGIIAPLIRVLECGNESGKIGSARCLMKLTFNSDNAWSVSAHGGVTCLLKICSNGEPKGELVGPACGVLRNLVGVEEIKRFMVEEGAISTFIRLVKSRDEAIQVNSIQFIQSVASGDEQVREMVIREGGIRALLRILDPKCSCSSKTREITMRAIENLCFSSSSSVSILMSYGFVDQLLYYIRKGEDSIQELALKVAFRFCGRSEEAKKAMGDAGFMPELVKFLNAKSFEVREMAAESLSAMVMVPKNRKKFVQDDQNISLLLQLLDPEEGNSSHKKFLISILMSLTSCNSGRKKIVSSGYAKNIEKLAEAEVSSDAKRLVRKLSTNRFRSMLSGIWLS 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0671 580 SUPERFAMILY ARM repeat 162 562 IPR016024 -
Lele13g0671 580 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 284 328 IPR000225 GO:0005515
Lele13g0671 580 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 24 577 - -
Lele13g0671 580 Gene3D - 161 569 IPR011989 -
Lele13g0671 580 SMART arm_5 358 401 IPR000225 GO:0005515
Lele13g0671 580 SMART arm_5 316 356 IPR000225 GO:0005515
Lele13g0671 580 SMART arm_5 232 272 IPR000225 GO:0005515
Lele13g0671 580 SMART arm_5 445 485 IPR000225 GO:0005515
Lele13g0671 580 SMART arm_5 273 315 IPR000225 GO:0005515
Lele13g0671 580 SMART arm_5 190 231 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0671 Lele-ChrLele13 18803658 18805400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0671 144 434 U-box Gene Family AT2G23140 25.926 8.06e-14 72.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g1831 15 11188386 11191536 Lele13g0671 13 18803658 18805400 CCT
Lele16g1860 16 11121265 11127672 Lele13g0671 13 18803658 18805400 CCT
Lele13g0689 13 18953127 18968110 Lele13g0671 13 18803658 18805400 CCT
Lele14g0588 14 17359667 17369268 Lele13g0671 13 18803658 18805400 CCT
Lele15g1794 15 10865001 10874824 Lele13g0671 13 18803658 18805400 CCT
Lele16g1825 16 10826679 10837868 Lele13g0671 13 18803658 18805400 CCT
Lele13g0671 13 18803658 18805400 Lele15g1813 15 11035205 11036944 hybridization
Lele13g0671 13 18803658 18805400 Lele16g1842 16 10981457 10983430 hybridization