Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0664 ATGGCGACTCACCTTCCCGACCACTTTAAGTGTCCGATTTCCCTAGAGATAATGTCCGACCCAGTTATCCTTTCCTCGGGTCACACCTTTGACCGTGCTTCCATCCAACGGTGGCTCGACGCCGGTCTCCGGGTTTGTCCAATTACCAAAGTACCCCTCCCCGATCACCCTTCCCTCATCCCCAACCATGCTCTCAGAAGCTTGATTTCCAACTATGCTCTCATTACGCCTCTACAGCAGCAGCTGCCTCCCCAACCTGAAACCCTAATCTCCTTGCTCACTTCTCGGTCTTCCCCCTTGGAATCTAAAATTGAATTACTAGATCAAGTCACCCGGCTTTCCAAGCGTGACTCGGTGTTTCGCCGGCGGTTGACTGAGTCTGGGGTCGTGTCGGCGGTGCTCAACTGCGTTGACTCCGGTGATTCTGGTCTTCAGGAGAAAGCCCTCTCCTTGCTATTGAATCTAAGTCTTGACGATGATAACAAGGTAGGCTTGGTGGCGGAAGGTGTGATACGTCGAGTTGTGGCTGTTCTGCTGGGTGGCTCACCGAATTGCAGAGCGATTGCGGCAACTATGCTGACCAGCTTGGCGGTTGTGGAATTTAATAAAGCCACGATTGGTGCATACCCATGTGCGATTGAAACTCTGGTTTCGCTTCTTCGGAATGGTAAAGGGAGAGAGAAGAAGGAAGCTGCCACGGCGCTTTATGCAATCTGTTCTTTTCCTGATAATCGAAGGAGAGCTGTAGAATGTGGGGCGGTTCCCATTTTGCTTGGAGCTGCTGATTCTGGGCTTGAGAGGGCTGTTGAAGTTCTAGGTATTCTGGTTAAGTGTAAGGAAGGTAGGGAACAAATGGAAAGCTACCATGGATGCATACATATTCTGGCTCGGGTTTTGAGGAATGGAAGCTCGAGGGGAATTCAATACGCACTGTCGGCATTGAACTCACTTTGTTTAACTAGTGAAAAAATGAAATTAGAGGCAGTAAAAGAAGGAGTTTTGGAGATTGGTCTTGCATTGCTGGATGATGATAACGAGAAAGTAAGGAGAAACTCGGCCAATTTGATTCAGGTTCTGCGTGGAAACCAGTGGACAAGTTGA 1101 0.4923 MATHLPDHFKCPISLEIMSDPVILSSGHTFDRASIQRWLDAGLRVCPITKVPLPDHPSLIPNHALRSLISNYALITPLQQQLPPQPETLISLLTSRSSPLESKIELLDQVTRLSKRDSVFRRRLTESGVVSAVLNCVDSGDSGLQEKALSLLLNLSLDDDNKVGLVAEGVIRRVVAVLLGGSPNCRAIAATMLTSLAVVEFNKATIGAYPCAIETLVSLLRNGKGREKKEAATALYAICSFPDNRRRAVECGAVPILLGAADSGLERAVEVLGILVKCKEGREQMESYHGCIHILARVLRNGSSRGIQYALSALNSLCLTSEKMKLEAVKEGVLEIGLALLDDDNEKVRRNSANLIQVLRGNQWTS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0664 366 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Lele13g0664 366 CDD RING-Ubox_PUB 9 50 IPR045210 -
Lele13g0664 366 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Lele13g0664 366 Gene3D - 83 264 IPR011989 -
Lele13g0664 366 SUPERFAMILY ARM repeat 87 359 IPR016024 -
Lele13g0664 366 FunFam RING-type E3 ubiquitin transferase 4 76 - -
Lele13g0664 366 Gene3D - 265 360 IPR011989 -
Lele13g0664 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 74 IPR013083 -
Lele13g0664 366 PANTHER U BOX DOMAIN-CONTAINING 6 355 - -
Lele13g0664 366 SUPERFAMILY RING/U-box 4 73 - -
Lele13g0664 366 SMART arm_5 201 240 IPR000225 GO:0005515
Lele13g0664 366 SMART arm_5 241 277 IPR000225 GO:0005515
Lele13g0664 366 SMART arm_5 278 319 IPR000225 GO:0005515
Lele13g0664 366 SMART arm_5 117 157 IPR000225 GO:0005515
Lele13g0664 366 SMART arm_5 158 198 IPR000225 GO:0005515
Lele13g0664 366 SMART arm_5 321 361 IPR000225 GO:0005515
Lele13g0664 366 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0664 Lele-ChrLele13 18704388 18705488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0664 1 361 U-box Gene Family AT4G21350 62.060 2.35e-152 432