Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0654 ATGGGTGAGGAGGAAGTTTTGCCGGATCATCTGCGCTGCAAGCGCACCGACGGGCGCAAATGGCGGTGTAGCCGGAGAGTGATGGACAACGTGAAGCTTTGTGAGATTCACTATCTTCAAGGCCGCCATCGGCAATACAAGGAAAAGGTCCCGGAGTCGCTGAAGCTTCAGAGAAAGCGTAAGAAAGGGATTAATAAGGACGACTCTGTTCTCAACAATGCGGAAGTGAAGGCACGGAAAGTGGTCAAGATGGCGAAGATGATGAAAAAAAGGATAAAAGTGTCAGATGATTCGGAGGCAATGGAAGCTCCCCTGCGGAAGGAGTCCAAGCAGGGCAATAAGCAGTTGGAGTTGATAAGGATGGTGCTGAAGAGAGAGGTTGAGAAAAGGAAAAAGAAGCAGGGAGAGAAGATAAAGAGGAAGAAGGAGGAGGAAGGAGAGGAATTGCATTACGGTGAGGGAGAGTTAACAAAAGAATTGCCCAATGGTTTAATGGCAATTTCTAGGGCATCAACGGCCCAAGAATACTGCAATGTAGGTTCTCAATGTGATGTTAAATTATGTGTTGATCATAAGGCAATTACTCCACGTTACTTCAGGTCCAAGAATGTTGAGAGGCTGCCTGAGGAAAAGTTTCAGGTTTTACCGTATGGACGCAAGTGATACCTGTCTGCATTGCATCTATGGCTATTTGAAAAGTATTTTGATACTCAAAATGAAGTTAAGATGGCATGTCCAGTTTGTCGAGGAACTTGCTCATGTAAAGACTGCTTGAGAAGTAAATGTAAAGACAACGAAACTAAGGAATATTTGGCTGGTAAAAGTAAAATTGATAAAATATTGCGTTTTCATTATTTAATTTGTACGCTTCTTCCTATACTGAAACAAATAAACGAAGACCTCAATGCTGAGATAGAAACAGAAGCTAAAATCAGAGGTAAAAGACCATCTGATATTCACATCAAGCAAGTTGAATTTTCCAGCAATGAACAGACTTACTGGAACTCCTCTGAAGAAATTAATACATCTATTCCCAGGTCATCTGATGGGATGGATGCCTGTCTTGCCAGTGAAAATCATCTTTTGAATAAGAAGTCCATCGCCAACGGCAATTCAGTAGGGACTTTTTCATTGCATAAATGCACAAACTATGATGATACTGGCAGTGTATCTTGTCCTCCAAAAGAACTTGGTGGTTGCGGTGATAATTTTCTTGAATTAAGATGTTTTTTTCCTTTAAGTTCGATCAAGGAGATGGAAGTAACAGCAGAAGAAATAGTTTGCAGCTACGACTTTCCTGAAACTTTGGACAAAAGTTTGAGGTGCTCATTGTGTCCAGACACAGATAATAAACTTAATGGATTTAAGCAGTTACGAGAAGCAGCTCTTAGGGAAGATTCAAAGGACAATTGGTTGTTTTATCCCACTGTTTTGGACATTGGTGATGATAATTTTGAACACTTTCAGAAGCACTGGGGAAAAGGCCATCCCGTAGTAGTGCGAGGTGTGCTCCAAAATACATCAAACCTCAGTTGGGATCCACTGGTCATGTTCTGTACTTATCTTGAGGGTAGCATCTCAAGATATGAGAATGACAGGGATGAACTTGAAGCTTGTTTGGATTGGTGTGAGGTGGAAATTAACATTAGGCAGTGGTTTACTGGATCTCTTAAATGTCAGCCACAGAAAAACATGTGGCATGAGATGCTGAAATTGCAGTGGTTACTGTCTTCACAACTATTCAAAGAATGGTTTCCAGCTCATTTTGCTGAAGTAATTGATGCTCTACCACTTCAAGAATACATGAATCCTACATCTGGTTTTCTGAATTTAGCAAGAAACCTGGCCCAGGGGAGTTCAAAGCATGACCTAGGACCATATATCTATCTTTCGTATGGATGTGGTGATGAACAGAGTGACTTTGCGACAAAACTGTCTTATGATTCATATGATGTGGTGATAACTTGGATGAGATACCATCTAAGCACTGGAGCATGCACTAGTAGTAAATTTGTCAATTTGGGTAAAAGTAAAGGTCCAGTTGGTCTTAGTCTCTGGAGAATAATCTTGGCTGCTGTTAATATTATGGCTCACACCACGGATGTCCCTCTCTCGACAGAACAGCTGACTAAAATAAGGAAGCTGCTGAAAAAGCACCAAAGTCTGTGTCGGAGGGATTCTTCCGGAATTAGTACTGAAGAATTAAAGGAACAGAGAGAGAAAGTAAATTCATTACTGCCTGCTGAAGACATTGAAAAGACCAGGTTGCATAGAAAGGAGAGAGAAGAAAAGCATTTTTTCAGGAGAGTCAACAGAACAGCTTGCATCGCTACTGAAGCAACAGGTGTAGCTTATCAGAGTATAGACAGCAAAATATCCCAGGATGAAGAATGTGATTCTGATTCCGATTCTGAAGATCCCCATGAAAGTTCAAATAACAATAGAAATGAGAAGTTTATTAAACGTTCTGGTTCCCAGTGGGATGTGTTTTGCAGACGAGATGTTCCAAAGCTCTTAGAATACCTTAAAAGACACTCTGCTGAATTTTCTCCTTCCCACGACAATCACAAGCAGGGGGATCATCCATTGTTAGGTCAAAGCTTCTTTCTTGACAACACTCACAAGACGAGGCTCAAGGAGGAATATAAAATTGAACCATGGACTTTTGAGCAACATGTCGGCGAAGCTGTCATTATTCCTGCTGGATGTCCATATCAGATTAGAAATTCTAAGTGTTGTGTTCATGTAGTATTGGAATTTGTTTCCCCTGAGAATGTTGCCGAGTGTATCCAATTGATTGATGAAACACGTCAGCTTCCAGAAGACCACAAAGCAAAAGTTGACCATCTTGAGGTGAAGAAAATGGCTCTTCATAGCATCGATTCAGCAATAAAAGAGATACGTGAACTTACCTCCAAAACGTGA 2925 0.4106 MGEEEVLPDHLRCKRTDGRKWRCSRRVMDNVKLCEIHYLQGRHRQYKEKVPESLKLQRKRKKGINKDDSVLNNAEVKARKVVKMAKMMKKRIKVSDDSEAMEAPLRKESKQGNKQLELIRMVLKREVEKRKKKQGEKIKRKKEEEGEELHYGEGELTKELPNGLMAISRASTAQEYCNVGSQCDVKLCVDHKAITPRYFRSKNVERLPEEKFQVLPYGRKXYLSALHLWLFEKYFDTQNEVKMACPVCRGTCSCKDCLRSKCKDNETKEYLAGKSKIDKILRFHYLICTLLPILKQINEDLNAEIETEAKIRGKRPSDIHIKQVEFSSNEQTYWNSSEEINTSIPRSSDGMDACLASENHLLNKKSIANGNSVGTFSLHKCTNYDDTGSVSCPPKELGGCGDNFLELRCFFPLSSIKEMEVTAEEIVCSYDFPETLDKSLRCSLCPDTDNKLNGFKQLREAALREDSKDNWLFYPTVLDIGDDNFEHFQKHWGKGHPVVVRGVLQNTSNLSWDPLVMFCTYLEGSISRYENDRDELEACLDWCEVEINIRQWFTGSLKCQPQKNMWHEMLKLQWLLSSQLFKEWFPAHFAEVIDALPLQEYMNPTSGFLNLARNLAQGSSKHDLGPYIYLSYGCGDEQSDFATKLSYDSYDVVITWMRYHLSTGACTSSKFVNLGKSKGPVGLSLWRIILAAVNIMAHTTDVPLSTEQLTKIRKLLKKHQSLCRRDSSGISTEELKEQREKVNSLLPAEDIEKTRLHRKEREEKHFFRRVNRTACIATEATGVAYQSIDSKISQDEECDSDSDSEDPHESSNNNRNEKFIKRSGSQWDVFCRRDVPKLLEYLKRHSAEFSPSHDNHKQGDHPLLGQSFFLDNTHKTRLKEEYKIEPWTFEQHVGEAVIIPAGCPYQIRNSKCCVHVVLEFVSPENVAECIQLIDETRQLPEDHKAKVDHLEVKKMALHSIDSAIKEIRELTSKT 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0654 974 Pfam JmjC domain, hydroxylase 825 918 IPR003347 -
Lele13g0654 974 ProSiteProfiles JmjC domain profile. 604 937 IPR003347 -
Lele13g0654 974 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 9 973 IPR045109 GO:0032454|GO:0033169
Lele13g0654 974 SUPERFAMILY Clavaminate synthase-like 484 965 - -
Lele13g0654 974 SMART cupin_9 585 937 IPR003347 -
Lele13g0654 974 Gene3D Cupin 476 776 - -
Lele13g0654 974 Gene3D Cupin 777 946 - -
Lele13g0654 974 Pfam WRC 8 49 IPR014977 -
Lele13g0654 974 Coils Coil 124 144 - -
Lele13g0654 974 MobiDBLite consensus disorder prediction 794 817 - -
Lele13g0654 974 ProSiteProfiles WRC domain profile. 7 53 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0654 Lele-ChrLele13 18629405 18636885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0654 8 47 GRF Transcription Factor Family AT2G22840 55.000 7.42e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele13g0654 JmjC 2.4e-10 CL0029