Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0623 ATGGAAGATCCTACCTTTCTTCATCAATGGCAATTGAACTCTCTGGAAGATCCAAGCTTATTGCCACTAGCTGCTGCTTTTGGAGAGACCTTACAACAACAAAATTCATTCTCAAACCCAACAACGTTGAATCCCAAAACTTCCATGGAAACTACACTTTCTGGCATTGAAAGGCCCCAGAAACAGATTAAACCCAACAATTGGAGCCCCAACACAACAAGTGATCAGAACCAGACATTAGACACAGACTATGATTATTGTTCCAATCTTCTTTCCTTTGTCAATTCAAGTTACATAAGCCAATTGGGGGCAACATTAAAGCCTAATAATAAGGAGCAGATCCCATGTCATGAAATCAACGGCACAATTTCTTCATCAGACATGTTGGCTTCCTCTCACGGATCCTTGGGAAATCAGAACTTTGTCTTCAATGCCAGCCAAGATCCTAGAAATAATAATATTGGAACAAGTCCTAAATTTTCTCAACCTCAAGATCACATAATTGCTGAAAGAAAGCGCCGAGAAAAGCTCAGCCAACGCTTCATTGCTCTGTCTGCTCTTGTCCCTGGCCTGAAAAAGACGGACAAGGCTTCTGTTCTTGGGGATGCTATAAAGTATTTGAAGCAATTGCAAGAGAGAGTGAGGGTTCTTGAAGAGGAAAAGAGTAGAAGGAGCACTGTGGAATCTGTGGTGGTTGTGAAGAAAATTCAATTATTATTAGCTGATGAACAAGGAGATTGTTCTTCAGACTCTTCTAGTGAGCCCCGTGAAGAGCCATTACCAGAAATTGAAGCTAGATTTTGTGAAGGAAACGTTCTCATAAGAGTTCACTGTGAGAAAACGACAGGAGTTATAGAAAAAACAGTGAGTGAGATCGAGAAACTTCATATGATAGTCACAAGTACCAGTGTCATGACCTTTGGCAGTTCTGCTCTTGATATAACCATAATCGCTCAGAAGGATAAGGAATTTTGCTTGAAAGTGAAGGAGCTTCTAAGAAGCCTACGCTCAGCTTTTGAATCTTTCATGTGA 1032 0.407 MEDPTFLHQWQLNSLEDPSLLPLAAAFGETLQQQNSFSNPTTLNPKTSMETTLSGIERPQKQIKPNNWSPNTTSDQNQTLDTDYDYCSNLLSFVNSSYISQLGATLKPNNKEQIPCHEINGTISSSDMLASSHGSLGNQNFVFNASQDPRNNNIGTSPKFSQPQDHIIAERKRREKLSQRFIALSALVPGLKKTDKASVLGDAIKYLKQLQERVRVLEEEKSRRSTVESVVVVKKIQLLLADEQGDCSSDSSSEPREEPLPEIEARFCEGNVLIRVHCEKTTGVIEKTVSEIEKLHMIVTSTSVMTFGSSALDITIIAQKDKEFCLKVKELLRSLRSAFESFM 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0623 343 Coils Coil 200 227 - -
Lele13g0623 343 MobiDBLite consensus disorder prediction 57 80 - -
Lele13g0623 343 Pfam Helix-loop-helix DNA-binding domain 164 211 IPR011598 GO:0046983
Lele13g0623 343 Gene3D - 156 225 IPR036638 GO:0046983
Lele13g0623 343 CDD bHLH_AtNAI1_like 164 235 - -
Lele13g0623 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
Lele13g0623 343 SMART finulus 167 216 IPR011598 GO:0046983
Lele13g0623 343 PANTHER BHLH TRANSCRIPTION FACTOR 27 339 - -
Lele13g0623 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 165 224 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0623 Lele-ChrLele13 18422884 18424905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0623 1 343 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.571 9.62e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele13g0623 HLH 2.3e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0622 13 18403096 18418612 Lele13g0623 13 18422884 18424905 CCT
Lele14g0529 14 16924765 16932287 Lele13g0623 13 18422884 18424905 CCT
Lele15g1858 15 11359055 11377012 Lele13g0623 13 18422884 18424905 CCT
Lele13g0623 13 18422884 18424905 Lele13g0623 13 18422884 18424905 ECH
Lele13g0623 13 18422884 18424905 Lele15g1857 15 11352540 11355036 hybridization
Lele13g0623 13 18422884 18424905 Lele16g1884 16 11273981 11276255 hybridization