Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0622 ATGGCTTCGTCGGAGATCGAGGTGGTGTCATCGGACTCTAAAACCCCGAAAACTCCCGATGCACCTCGCGTAGTAGACGTGATCTCTGCCTGTTTTTGTGGGGACTTAGAGAAATTGAGGTGGTTTGTGGAACAAGAAGGTGCCTCCGTTTCTGTACCTGATTCCAATGGCTATTATCCTCTCCAATGGGCATCCCTTAATAACTACCCAGATATTGTGCAGTATGTCATTAAGCACGGGGGCGATGTCAATGCTACTGATCACAGGCAACAGACGGCACTACACTGGGCGGCATTTCGTGGTGCAACTACAGTGGCTGATTTGCTCTTGGAGAACGGTGCTTGGCTTGAGGCTGCTGATATAAATGGATACAGGGCAGCTCACGTTGCTGCTCAACATGGACAAACAGCTTTCTTAAATCACATCGTTGCAAAGTACAATGCTGACTTCGATGCACCCGATAATGAGGGACGAAGTCCTCTTCATTGGGCTGCATATAAGGGGTTTGCTGATACAATCCGATTGCTTTTATTCCGGGATGCATGCCAAGGGAGACAAGATAAAAACGGTTGTACGCCATTGCACTGGGCTGCACTAGGAGGAAATGCAGAGGCATGCACTGTGCTTGTACACGCAGGCACAAAGAAAGAACTGGTGGTGAAGGATAATGCTGGATTCACCCCTGTACAGCTTGCACATGATAAGGGTCATCGGCATGTCACCCTTTTCCTTTCTAAACAACAGAGAGCTCTGAGCAACTGCTGGAAAGACAAAATTTGTAGTGGGAGGATCACAGATATTGGTTATGCTCCCATTTTATTTTGTATTATAATCTTTGAAATGTTCCTCTTCATCAACTCAGTAGTTGCAGGTTCTAGTTTTCAAAAGATTACTGCTGTTGTTGGTCTTTGGGCTTGGACAGCTCTTTCTCTGGCAGTTGGTAGCTTGATTATGTTCTATAGGTGCAGTAGTAAAGATCCTGGTTATATAAAAGGACCAGGACATTCAGGTGCTCATAGTGATGCAGAGGATCCGTTATTGAATATTGACCTGAACAGCTCCTCTGTTTGGACAGGAAATTGGTCTCAACTTTGCCCTACCTGCAAGATAATAAGAACTGTCCGATCCAAGCATTGCCCTACTTGTAAGCGTTGTGTGGAACAGTTTGACCACCATTGCCCATGGATATCTAACTGTGTGGGAAAGAGGAACAAAAGGGATTTCTTTATTTTTGTTTGCATGGCAACCATGACATCATTCATTAGCGGTGCTGTTACGGTTCAAAGAATTTGGACATCATCCATAGCATTGTCAGGAGAAACATGGATCCATCATATGTTAGTACAGCATCCTGGTGCTATTGCATTTCTGGTGCTGGACACTTTTATTTTCATTGCTGCTGTAACTTTGACGTCAACACAGGCTTCAATGATAGCTCGGAATATCACCACAAATGAAGTAGCAAACTCTGCGCGATATGGGTATCTTCGTGGTCCTGATGGGAAGTTTAGAAATCCATACAACCATGGCTGTAGGAAGAATTGTTCTGACTTCTTTTTTCAGGGCTATACAAGTGATGATAATATTGCTTGGCCTCCATTACAGCGGGTGGCAACGTAG 1620 0.4475 MASSEIEVVSSDSKTPKTPDAPRVVDVISACFCGDLEKLRWFVEQEGASVSVPDSNGYYPLQWASLNNYPDIVQYVIKHGGDVNATDHRQQTALHWAAFRGATTVADLLLENGAWLEAADINGYRAAHVAAQHGQTAFLNHIVAKYNADFDAPDNEGRSPLHWAAYKGFADTIRLLLFRDACQGRQDKNGCTPLHWAALGGNAEACTVLVHAGTKKELVVKDNAGFTPVQLAHDKGHRHVTLFLSKQQRALSNCWKDKICSGRITDIGYAPILFCIIIFEMFLFINSVVAGSSFQKITAVVGLWAWTALSLAVGSLIMFYRCSSKDPGYIKGPGHSGAHSDAEDPLLNIDLNSSSVWTGNWSQLCPTCKIIRTVRSKHCPTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFVCMATMTSFISGAVTVQRIWTSSIALSGETWIHHMLVQHPGAIAFLVLDTFIFIAAVTLTSTQASMIARNITTNEVANSARYGYLRGPDGKFRNPYNHGCRKNCSDFFFQGYTSDDNIAWPPLQRVAT 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0622 539 ProSiteProfiles Ankyrin repeat profile. 89 121 IPR002110 GO:0005515
Lele13g0622 539 FunFam S-acyltransferase 143 251 - -
Lele13g0622 539 Pfam Ankyrin repeat 189 213 IPR002110 GO:0005515
Lele13g0622 539 Pfam Ankyrin repeats (3 copies) 119 181 IPR002110 GO:0005515
Lele13g0622 539 Pfam Ankyrin repeats (3 copies) 30 114 IPR002110 GO:0005515
Lele13g0622 539 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 27 523 - -
Lele13g0622 539 ProSiteProfiles Ankyrin repeat region circular profile. 156 177 - -
Lele13g0622 539 FunFam S-acyltransferase 11 142 - -
Lele13g0622 539 ProSiteProfiles DHHC domain profile. 363 413 - -
Lele13g0622 539 MobiDBLite consensus disorder prediction 1 20 - -
Lele13g0622 539 Pfam DHHC palmitoyltransferase 363 489 IPR001594 GO:0016409
Lele13g0622 539 ProSiteProfiles Ankyrin repeat region circular profile. 56 87 - -
Lele13g0622 539 SMART ANK_2a 89 118 IPR002110 GO:0005515
Lele13g0622 539 SMART ANK_2a 122 152 IPR002110 GO:0005515
Lele13g0622 539 SMART ANK_2a 189 218 IPR002110 GO:0005515
Lele13g0622 539 SMART ANK_2a 156 185 IPR002110 GO:0005515
Lele13g0622 539 SMART ANK_2a 56 85 IPR002110 GO:0005515
Lele13g0622 539 Gene3D - 127 193 IPR036770 -
Lele13g0622 539 ProSiteProfiles Ankyrin repeat profile. 189 221 IPR002110 GO:0005515
Lele13g0622 539 MobiDBLite consensus disorder prediction 1 17 - -
Lele13g0622 539 SUPERFAMILY Ankyrin repeat 28 245 IPR036770 -
Lele13g0622 539 Gene3D - 27 126 IPR036770 -
Lele13g0622 539 ProSiteProfiles Ankyrin repeat region circular profile. 89 120 - -
Lele13g0622 539 ProSiteProfiles Ankyrin repeat profile. 56 88 IPR002110 GO:0005515
Lele13g0622 539 Gene3D - 194 247 IPR036770 -
Lele13g0622 539 ProSiteProfiles Ankyrin repeat profile. 156 188 IPR002110 GO:0005515
Lele13g0622 539 ProSiteProfiles Ankyrin repeat region circular profile. 189 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0622 Lele-ChrLele13 18403096 18418612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0622 17 237 Miscellaneous Gene Families AT1G05640 28.319 4.24e-13 70.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0622 13 18403096 18418612 Lele13g0623 13 18422884 18424905 CCT
Lele13g0622 13 18403096 18418612 Lele14g0530 14 16936483 16938630 CCT
Lele13g0622 13 18403096 18418612 Lele15g1857 15 11352540 11355036 CCT
Lele13g0622 13 18403096 18418612 Lele16g1884 16 11273981 11276255 CCT
Lele13g0622 13 18403096 18418612 Lele15g1858 15 11359055 11377012 hybridization
Lele13g0622 13 18403096 18418612 Lele16g1885 16 11280829 11289146 hybridization