Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0613 ATGGGAAGAGGGAAGATTGCGATTCGAAGGATCGAAAATTCGACGAGCAGGCAAGTAACTTTCTCGAAGAGAAGAAATGGATTGCTGAAGAAAGCCAGAGAGCTATCTGTTCTTTGTGATGCAGAAGTTGGATTGACCGTCTTCTCCAGCACCGGCAAGCTCTATGAGTTTGCAAGCACCAGCATGAAATCTGTTATTGAGCGATACAACAAGCTTAAAGAGGAACAACTGATGCTTATGAATCCTGCTTCAGAAGTCAAGCTTTGGCAGAGAGAAGTAGCAAGCCTGAGGCAACAACTACAATACTCGCAAGATTATCACAGGCAACTGATGGGCGAAGAACTTTCTGGTTTGGGAATTAAAGAACTACAAAATCTGGAAAACCAACTAGAGACGAGTTTGAAGGGTGTCCGCATGAGGAAGGATCAAATTTTAAATCACGAGATTAAAGAACTACGCCAAAAGGGAAATCTCGTTCATGAAGAAAATGTGCAACTTCACACAAAGTTAGACATCATCCAAAAAGAAAATGAAGAACTGAGAAAGAAGGCTTTCGAAGCACAAAGCATGGATGAAGAAAATGGGACATCCAATCCTTCGTACACTATACGGAATGGATATGATTTACATGCACCAATCTGCCTCCAGCTAAGCCAACCACAGCCTCAATACAATGAACAACCAACCAAAACAATGGAACTGGGGTACTCACTCAAACAAATGATATAG 729 0.4184 MGRGKIAIRRIENSTSRQVTFSKRRNGLLKKARELSVLCDAEVGLTVFSSTGKLYEFASTSMKSVIERYNKLKEEQLMLMNPASEVKLWQREVASLRQQLQYSQDYHRQLMGEELSGLGIKELQNLENQLETSLKGVRMRKDQILNHEIKELRQKGNLVHEENVQLHTKLDIIQKENEELRKKAFEAQSMDEENGTSNPSYTIRNGYDLHAPICLQLSQPQPQYNEQPTKTMELGYSLKQMI 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0613 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele13g0613 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele13g0613 242 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Lele13g0613 242 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Lele13g0613 242 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Lele13g0613 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele13g0613 242 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele13g0613 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 188 - -
Lele13g0613 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele13g0613 242 Coils Coil 163 190 - -
Lele13g0613 242 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Lele13g0613 242 Coils Coil 120 140 - -
Lele13g0613 242 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele13g0613 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele13g0613 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele13g0613 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0613 Lele-ChrLele13 18273072 18282872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0613 1 238 MADS-box Gene Family AT2G14210 59.833 3.45e-88 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele13g0613 K-box 7.7e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0613 13 18273072 18282872 Lele14g0507 14 16705571 16710812 CCT
Lele13g0613 13 18273072 18282872 Lele16g1904 16 11480703 11483657 CCT
Lele13g0613 13 18273072 18282872 Lele15g1871 15 11492422 11502827 hybridization