Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0609 ATGATTAGTTTGACTCAAGAACTTCATTGGGTTCTTAAATGTACGCAAATTTCATCTTTCCCAGATGAAATAATAGTTTTAGTTGTGCAGGAAGATCAGCTCGTTCACCTCCTCGTCGAGCTCGTAAATGCCCAAAGCCAGGTACTTCATCATCATCATGCTTCTCCTGCTAGAACTGACAAACGTTGCACATTCGGTCATCGCATGGCTATTGGAGTTGGAATTGCAGTGGCACGAAGAGTTTTGGGTCCTGGTACAGTTAAACCTGAAAGGAGGAGGAGAATAAGGTGGGTTGCTGCTGCTGCTCCTCCTCCTCCGGCACCCACAGAAAATGGTCTTCTTGGTGATGATGCTTGCAATGTTCACTCAAAAGCTTTTCTTGATGTTTTGCCGAACAGAAACGAGAGTGACATTAGCAGTCATCACAACAGGTTCAACCTCGTTAGCTCCGATCCAATATGGATTCTTTCTGGTTCCTCGCTCTCCTCCTTAGATGCATCGACATTCTTTCATGGCCCGTGCTTGCTTTGGGTTATCCTCTAGTCGGGTTCTCGACAAGTATTCTTACATTTCCATCCTCATCATCATCTTCAACGTCAGGACACAGAGCAAAGTCTTATTGATGCAGAAACAAGAAAAGAAGGTCCAACTACGGAGGAGAATGAGATACTGAAGGAGCTTATTTTCTTTGCACAGACAAATAGAGGAAGGCTTCTCATGGAACAGAAAGACATCAAAGATTTGGAGATGATTGAGAAAGAGCAAGCTCCTGAAGGCAAACAAGTTGATCCAGCCTTGTGCTGCCTAAAATCAAATGAAAGCATTTCATCTGCCATGGCGGAAACCGAAAAAATAGCGGCAGAAGACACAGAACATGGAACACATCCACAGATTTCAGCATCTGAGAATGTACAAAAAGAGTGGACTTGTGCCATATGCCAATTGACAATGCCTTCTGAAGCTAATTTGAATTCCCACCTTCAAGGAAGAAAACACAAGGCTGCTTGCGAAGCACTGAACACGAAAGCTAAAGCAACCGCGGCGAAAGACACAGGAAGCGGGGCATCTCCTCAGGTTTCTGCGTCTACAAATGAACAACAGACAAAGTGGACTTGTGAGATATGCCAGTGGACATTGCCTTCTGAGGCTGCTTTGAAGACCCACATGTATGGAAAGAAGCATAAGGCTGCTTGTGAAGCACTGAAGGCGAAAAACAGTTGCAGATTTAGATGTGAAATGTGTAATGTAGATTGCACTAGTGTTAGTGACTTGGCTTCTCACTTGCAGGGTAAGAAGCACTTGGCTCAGAGTCAATTGCTAGGTGGTCAGAGTTACAGATTTAGATGTGGAATGTGTAATGTGGATTGCACTAGTGTAAGTGACTTGGCTTCTCACTTGCAGGGTAAGAAGCACTTGGCTCAGAGTCAATTGCTAGGTGGTCCTTGCCAGTAA 1452 0.4449 MISLTQELHWVLKCTQISSFPDEIIVLVVQEDQLVHLLVELVNAQSQVLHHHHASPARTDKRCTFGHRMAIGVGIAVARRVLGPGTVKPERRRRIRWVAAAAPPPPAPTENGLLGDDACNVHSKAFLDVLPNRNESDISSHHNRFNLVSSDPIWILSGSSLSSLDASTFFHGPCLLWVILXSGSRQVFLHFHPHHHLQRQDTEQSLIDAETRKEGPTTEENEILKELIFFAQTNRGRLLMEQKDIKDLEMIEKEQAPEGKQVDPALCCLKSNESISSAMAETEKIAAEDTEHGTHPQISASENVQKEWTCAICQLTMPSEANLNSHLQGRKHKAACEALNTKAKATAAKDTGSGASPQVSASTNEQQTKWTCEICQWTLPSEAALKTHMYGKKHKAACEALKAKNSCRFRCEMCNVDCTSVSDLASHLQGKKHLAQSQLLGGQSYRFRCGMCNVDCTSVSDLASHLQGKKHLAQSQLLGGPCQ 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0609 483 SMART c2h2final6 370 394 IPR013087 -
Lele13g0609 483 SMART c2h2final6 409 433 IPR013087 -
Lele13g0609 483 SMART c2h2final6 308 332 IPR013087 -
Lele13g0609 483 SMART c2h2final6 447 471 IPR013087 -
Lele13g0609 483 ProSitePatterns Zinc finger C2H2 type domain signature. 310 332 IPR013087 -
Lele13g0609 483 ProSitePatterns Zinc finger C2H2 type domain signature. 449 471 IPR013087 -
Lele13g0609 483 SUPERFAMILY beta-beta-alpha zinc fingers 297 341 IPR036236 -
Lele13g0609 483 SUPERFAMILY beta-beta-alpha zinc fingers 356 405 IPR036236 -
Lele13g0609 483 ProSitePatterns Zinc finger C2H2 type domain signature. 411 433 IPR013087 -
Lele13g0609 483 Pfam Zinc-finger of C2H2 type 409 433 - -
Lele13g0609 483 Pfam Zinc-finger of C2H2 type 447 471 - -
Lele13g0609 483 Pfam Zinc-finger of C2H2 type 370 394 - -
Lele13g0609 483 Pfam Zinc-finger of C2H2 type 308 332 - -
Lele13g0609 483 ProSitePatterns Zinc finger C2H2 type domain signature. 372 394 IPR013087 -
Lele13g0609 483 Gene3D Classic Zinc Finger 438 477 - -
Lele13g0609 483 Gene3D Classic Zinc Finger 287 338 - -
Lele13g0609 483 Gene3D Classic Zinc Finger 354 398 - -
Lele13g0609 483 Gene3D Classic Zinc Finger 399 437 - -
Lele13g0609 483 PANTHER OS06G0651300 PROTEIN-RELATED 341 440 - -
Lele13g0609 483 SMART ZnF_U1_5 406 440 IPR003604 GO:0003676|GO:0008270
Lele13g0609 483 SMART ZnF_U1_5 367 401 IPR003604 GO:0003676|GO:0008270
Lele13g0609 483 SMART ZnF_U1_5 305 339 IPR003604 GO:0003676|GO:0008270
Lele13g0609 483 SMART ZnF_U1_5 444 478 IPR003604 GO:0003676|GO:0008270
Lele13g0609 483 SUPERFAMILY beta-beta-alpha zinc fingers 409 439 IPR036236 -
Lele13g0609 483 SUPERFAMILY beta-beta-alpha zinc fingers 443 476 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0609 Lele-ChrLele13 18245763 18251586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0609 301 478 C2H2 Transcription Factor Family AT2G19380 26.943 1.10e-10 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele13g0609 zf-met 1.1e-08 CL0361