Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0608 ATGGCGGAAGACTCAGTACCGCCTCCATCTTCCTCTGCCTCCTCTGCTCCTCTCGGCTCCTCCGTGATCTCTATAGTGAACAAGCTCCAAGACATCTTCGCTCGGGTCGGCAGCCAGTCCACCATCGATCTTCCCCAAGTCGCCGTCGTTGGCAGCCAGAGTAGTGGCAAGTCCAGTGTCCTCGAGGCCCTTGTCGGCCGCGACTTCTTGCCCAGGGGTAATGATATTTGTACTAGGAGGCCTCTGGTGCTGCAGCTCGTGCAGACTAAGAAGAAGCCCGATGGCACTGAAGAGGAGTACGGGGAGTTCCTTCACTTGCCTGGCAAGAGGTTCTACGATTTCTCTGAGATTCGAAGGGAGATTCAGGCTGAAACTGACAGGGAAGCAGGAGGGAATAAAGGAGTCTCAGACAAACAGATACGTCTCAAGATATTTTCACCAAATGTTCTTGATATTACACTTGTAGATCTACCTGGGATTACAAAGGTTCCTGTTGGAGATCAGCCTTCTGACATTGAAGCACGAATCAGAACAATGATTATGTCATACATTAAAACTCCTACCTGTCTCATTCTTGCTGTAACACCAGCTAATTCAGATTTGGCCAACTCAGATGCTCTTCAAATGGCAGGAGTTGCTGATCCTGATGGCAACAGAACAATAGGAATAATCACAAAGTTGGATATCATGGACAGAGGCACTGACGCCAGGAATCTGTTACTTGGGAAAGTCATTCCTCTCCGACTTGGTTATGTGGGTGTTGTTAATCGTAGCCAGGAGGATATCCTAATGAACCGAAGTATAAAAGATGCTCTTATTGCTGAAGAGAAATTCTTCCGCAGTCGTCCAATATACAGTGGGCTAGCAGAGAGCTGTGGTGTTCCCCAGTTGGCAAAGAAGTTAAATCAGATTCTAGCCCAGCATATAAAGGCTGTTCTCCCAGGGCTCAGAGCTCGTATAAGTTCTCAACTGGTATCTGTTGCAAAGGAGCATGCAAGCTATGGGGAAATCACGGAGTCCAAGGCTGGCCAGGGTGCCCTTCTCCTAAATATTCTTTCAAAATATTCTGAAGCATTTTCCTCAATGGTAGAGGGAAAGAATGAGGAGATGTCTACATCTGAATTATCTGGTGGAGCTAGAATTCATTATATTTTCCAGTCTATATTTGTGAAGAGTTTAGAGGAGGTGGATCCATGTGAGGACTTGACTGATGATGATATTCGAACTGCTATACAGAATGCAACTGGGCCTAGATCCGCATTATTTGTTCCAGAAGTACCGTTTGAAGTCCTTGTGCGAAGGCAAATAGCTCGTCTATTAGATCCAAGCCTTCAGTGTGCGAGGTTTATATATGATGAGTTGATGAAGATCAGCCATCGCTGTATGGTCACTGAACTGCAGCGGTTCCCATTTTTGAGAAAGCGCATGGATGAAGTAATAGGGAACTTTCTACGAGAAGGTCTCGAACCCTCAGAGAATATGATTGGACACATTATAGAAATGGAGATGGACTATATAAACACTTCCCACCCAAATTTTATTGGTGGAAGCAAGGCATTGGAGACTGCTGTGCAACAGACCAAGTCTTCCAGGGTCCCCCTGTCATCCAGGCCAAAGGATGGTATTGTTATGGAATCTGATAAAGGAGCAGCCTCTGAAAGGAGTGTGAAGTCTCGGGGACTTATTGCAAGGCAAGTAAATGGAGTAGTGGCTGATCAGGGTGTTCGTGCTGCATCAGAAGTTGAAAAAGTTGCGGGCCCTGGACACAGCAGTGCAACAAGTTGGGGGATCTCATCTATTTTTGGTGGAGGTGATAGCCGTGTGTCTATAAAGGAGATCTCATCAAGTAAACCACACAATGAACCAGTTAACACTCATAGCATGGAACAGTCGTTCTCTATGATCCATCTGAGAGAGCCACCTGCTGTCCTGAAGCCATCTGAGAGCAATTCAGAAACAGAAGCCGTTGAAATTGCAGTGACAAAGTTGCTTTTGAAATCATACTATGACATTGTCAGAAAAAATGTTGAGGATTTGGTCCCCAAAGCAATTATGCACTTCTTGGTAAACAACACGAAGAGAGAGCTGCACAATGTTTTCATCAAAAAGCTTTACAGAGAAAACCTGTTTGAAGAGATGCTGCAAGAACCTGATGAGGTAGCAAAGAAAAGAAAGCGCTGTCGAGAATTGCTCCGAGCTTATCAACAGGCATTCCGGGACTTGGATGAACTGCCACTGGAAGCAGAAACAGTTGAAAGGGGATATAGCCTGCCTGAATCAACTGGCTTGCCTAAAATTCATGGGTTGCCATCTTCATCTCTGTATTCTGCAAGCAGTTCTGGTGACTACTATGGAGCTTCCCCAAAGAACCCAAAGTCTAGAAAATCTTCACATTCCGGGGAGTTTCAATCCCCATCACATGCCTTTTCTGATTCCAATGGAAGTGGAAGGCCGTTCTCGTCAGGTTTCTATCCCCCGGTCGACGATTAA 2490 0.4574 MAEDSVPPPSSSASSAPLGSSVISIVNKLQDIFARVGSQSTIDLPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLVQTKKKPDGTEEEYGEFLHLPGKRFYDFSEIRREIQAETDREAGGNKGVSDKQIRLKIFSPNVLDITLVDLPGITKVPVGDQPSDIEARIRTMIMSYIKTPTCLILAVTPANSDLANSDALQMAGVADPDGNRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDILMNRSIKDALIAEEKFFRSRPIYSGLAESCGVPQLAKKLNQILAQHIKAVLPGLRARISSQLVSVAKEHASYGEITESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPRSALFVPEVPFEVLVRRQIARLLDPSLQCARFIYDELMKISHRCMVTELQRFPFLRKRMDEVIGNFLREGLEPSENMIGHIIEMEMDYINTSHPNFIGGSKALETAVQQTKSSRVPLSSRPKDGIVMESDKGAASERSVKSRGLIARQVNGVVADQGVRAASEVEKVAGPGHSSATSWGISSIFGGGDSRVSIKEISSSKPHNEPVNTHSMEQSFSMIHLREPPAVLKPSESNSETEAVEIAVTKLLLKSYYDIVRKNVEDLVPKAIMHFLVNNTKRELHNVFIKKLYRENLFEEMLQEPDEVAKKRKRCRELLRAYQQAFRDLDELPLEAETVERGYSLPESTGLPKIHGLPSSSLYSASSSGDYYGASPKNPKSRKSSHSGEFQSPSHAFSDSNGSGRPFSSGFYPPVDD 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0608 829 SMART dynamin_3 19 266 IPR001401 GO:0003924|GO:0005525
Lele13g0608 829 SMART GED_2 653 744 IPR003130 GO:0003924|GO:0005525
Lele13g0608 829 MobiDBLite consensus disorder prediction 776 829 - -
Lele13g0608 829 FunFam Dynamin-related protein 3A 604 724 - -
Lele13g0608 829 Pfam Dynamin GTPase effector domain 654 743 IPR003130 GO:0003924|GO:0005525
Lele13g0608 829 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 322 IPR027417 -
Lele13g0608 829 Gene3D - 20 324 IPR027417 -
Lele13g0608 829 Gene3D Dynamin, middle domain 619 724 - -
Lele13g0608 829 Gene3D Dynamin, middle domain 344 543 - -
Lele13g0608 829 MobiDBLite consensus disorder prediction 776 819 - -
Lele13g0608 829 CDD DLP_1 42 314 IPR001401 GO:0003924|GO:0005525
Lele13g0608 829 FunFam dynamin-related protein 3A 20 323 - -
Lele13g0608 829 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 41 314 IPR030381 GO:0005525
Lele13g0608 829 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 70 79 IPR019762 -
Lele13g0608 829 ProSiteProfiles GED domain profile. 658 749 IPR020850 -
Lele13g0608 829 Pfam Dynamin central region 235 520 IPR000375 -
Lele13g0608 829 PRINTS Dynamin signature 146 163 IPR022812 -
Lele13g0608 829 PRINTS Dynamin signature 69 86 IPR022812 -
Lele13g0608 829 PRINTS Dynamin signature 238 257 IPR022812 -
Lele13g0608 829 PRINTS Dynamin signature 44 62 IPR022812 -
Lele13g0608 829 PRINTS Dynamin signature 215 231 IPR022812 -
Lele13g0608 829 PRINTS Dynamin signature 196 214 IPR022812 -
Lele13g0608 829 FunFam Dynamin-related protein 3A 345 556 - -
Lele13g0608 829 PANTHER DYNAMIN 21 743 IPR022812 -
Lele13g0608 829 Pfam Dynamin family 47 226 IPR045063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0608 Lele-ChrLele13 18236101 18243271 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g1909 16 11510398 11516930 Lele13g0608 13 18236101 18243271 CCT
Lele13g0606 13 18227245 18230488 Lele13g0608 13 18236101 18243271 CCT
Lele14g0504 14 16676205 16679776 Lele13g0608 13 18236101 18243271 CCT
Lele15g1877 15 11551364 11554537 Lele13g0608 13 18236101 18243271 CCT
Lele13g0608 13 18236101 18243271 Lele14g0507 14 16705571 16710812 CCT
Lele13g0608 13 18236101 18243271 Lele16g1904 16 11480703 11483657 CCT
Lele16g1897 16 11420719 11433316 Lele13g0608 13 18236101 18243271 CCT
Lele13g0608 13 18236101 18243271 Lele15g1875 15 11534931 11542975 hybridization
Lele13g0608 13 18236101 18243271 Lele16g1906 16 11491901 11502057 hybridization