Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0605 ATGGGAAGCAGCTTTCTCGCTCCACCAGAGAAGAAGCGTTCGATATTGTACACAGAAACTGGTTCGGCCGACCCGAGGCTGTATGCAGCAAATGGGTCAACCAAGCGCTCCAAGTCCAAGCACCCACCGCCTCCCCTCAGTATCCCCCCAGGTCATATCGCTTTCCGATTGCTGTGCCAAGCTTCCCGAATTGGCGGCATAATTGGCAAGTCCGGCTCCGTCATACAGAACCTCCAGCAAGTTACGGGGGCTAAGATCCGCGTCGAAGATACCCCATCCGAATCACCGGATAGGGTCATTGTTGTGATTGCGCCGAGTGCTCTCAGCGGCAAGGTTTTTCTGAGACCCCAGAGTCAGAATTCGGATTCGGAACCCTCCGAGGAGGATGACGATTATGGAGATGACGGCGGCGAGGATGAAGCTTTTGAGGTCTCAAAAGCTCAGGAAGCACTGTTGAAGGTGTTCGAGAGGATTCTGGATGTTGCGGCGGAGACTGAGGGCATAAGAGTGGAGAATGGACTAGTGTCCTGTAGGCTGCTGGCGGATGCGGCACAGGTTGGGGCGGTCATTGGGAAGGGAGGGAAGGTGGTGGAGAAGATTAGGAAGGACAGTGGATGTAAAATTAAAGTTTTGGCAGACAAGTTGCCTCCTTGCACTGCCCCGTCCGACGTAATGGTTGAGATAGAAGGCAATGTGCAGTCTGTAAAGAAGGCACTTCTTGCTGTTTCTCGCCGTCTTCAAGATTTTCCTCCATCCAGCAAGACAAAGATGATGGGAAGCAAGCCTCATGAAGTGGTTCAACATGAAAGCTTTGTTGCAGTTCTAAATGATACTTCAACTGTAGGTCCATGTGAGACTTCGCCTAATCTGGCAGACCATCTTCTGCAGAGAGGCTCTGTGGTATCTACTATGCCCAGCAGCTATGCTTCAGGATTTCATTCGGTGTCAGCTGAGGTTAACAGAGTCTCTACCCTGGATCCAACAAGACTTAAACAGGAAGTTTCCTTTAGAATTCTTTGCTCCAATGATAGGGTTGGTGGTGTAATTGGTAAAGGTGGCAGTATTGTCAGAGCCCTTCAGAATGAGACTGGGGCTACTATAAGTATTGGTCCTTCAGTGGAAGAATGTGAGGACAGATTGATTAGTGTTACTGCTTCTGAGAATCTTGAATCAAGATATTCCCCAGCGCAGAAGGCTGCCGTCCTTGTTTTCTCCAGGTCTGTAGAAGCAGGCATTGAGAAGGGGCTAGACTCAGGATCAAAGGGGTCATCTGTTACTGCAAGACTTGTGGTCGCATCAAACCACGTTGGTTGTTTATTGGGAAAAGGAGGATCAATAATCGCAGAAATGCGGAAGGCAACTGGTGCTAGCATGAAAATAATGGGGACTGACCAGGCTCCAAAGTGTGCATCGCAGAACGATCAATTAGTACAGATATCTGGAGAGTTTTCGAATGTTCAAGATGCATTGTATAATGCAACTGGCAGATTGCGATATAATCTTTTTAACAGCACACAGAACAGCGTTGGAACGAAAACCATTACCTCTGTATTACCTGATACCAGTCCTCATGGGAGATTGAGGGATCCTGTTCCACTTGTTGTCCAACCAGCCATTGGTGTTTCTCATAGTCTGAGTAGACACACTATGTCTCAAAACATAGATCAAGTTGTTTCTCGCTATTTAGATCACCCCTCTTCACCAGGGTCACGGGCACCACGGACGGTTTCTGGGATAAACTCGAGAGGCGTTAATGATGTTGGCAGGGGATTGACCTCTCTAAAAGGTGGCTTAGAACTTGGCAGCGGAAGCAAAATTGCCATGGTGACTAATACAACTTTGGAAATTGTTGTTCCTGATGATGTCATTGGCTCAGTATATGGGGAAAATGGTAGCAATTTGGCTCGTCTAAGAAAGATTTCAGGTGCCAAGGTTATTGTCCACGAACCGCGTCCAGGAACAAGAGACAGGACCATTGTCATATCCGGGACACCTGATGAAACTCAAGCAGCTCAGAGCCTTCTTCAAGCATTTATCCTCACAGGTTCTTCATGA 2055 0.4808 MGSSFLAPPEKKRSILYTETGSADPRLYAANGSTKRSKSKHPPPPLSIPPGHIAFRLLCQASRIGGIIGKSGSVIQNLQQVTGAKIRVEDTPSESPDRVIVVIAPSALSGKVFLRPQSQNSDSEPSEEDDDYGDDGGEDEAFEVSKAQEALLKVFERILDVAAETEGIRVENGLVSCRLLADAAQVGAVIGKGGKVVEKIRKDSGCKIKVLADKLPPCTAPSDVMVEIEGNVQSVKKALLAVSRRLQDFPPSSKTKMMGSKPHEVVQHESFVAVLNDTSTVGPCETSPNLADHLLQRGSVVSTMPSSYASGFHSVSAEVNRVSTLDPTRLKQEVSFRILCSNDRVGGVIGKGGSIVRALQNETGATISIGPSVEECEDRLISVTASENLESRYSPAQKAAVLVFSRSVEAGIEKGLDSGSKGSSVTARLVVASNHVGCLLGKGGSIIAEMRKATGASMKIMGTDQAPKCASQNDQLVQISGEFSNVQDALYNATGRLRYNLFNSTQNSVGTKTITSVLPDTSPHGRLRDPVPLVVQPAIGVSHSLSRHTMSQNIDQVVSRYLDHPSSPGSRAPRTVSGINSRGVNDVGRGLTSLKGGLELGSGSKIAMVTNTTLEIVVPDDVIGSVYGENGSNLARLRKISGAKVIVHEPRPGTRDRTIVISGTPDETQAAQSLLQAFILTGSS 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0605 684 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 330 386 IPR036612 GO:0003723
Lele13g0605 684 MobiDBLite consensus disorder prediction 123 138 - -
Lele13g0605 684 Gene3D - 332 497 - -
Lele13g0605 684 Gene3D - 123 251 - -
Lele13g0605 684 CDD PCBP_like_KH 335 404 - -
Lele13g0605 684 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 172 250 IPR036612 GO:0003723
Lele13g0605 684 ProSiteProfiles Type-1 KH domain profile. 52 102 - -
Lele13g0605 684 MobiDBLite consensus disorder prediction 562 583 - -
Lele13g0605 684 CDD KH-I 613 676 - -
Lele13g0605 684 CDD PCBP_like_KH 176 243 - -
Lele13g0605 684 MobiDBLite consensus disorder prediction 25 48 - -
Lele13g0605 684 SMART kh_6 610 680 IPR004087 GO:0003676
Lele13g0605 684 SMART kh_6 332 408 IPR004087 GO:0003676
Lele13g0605 684 SMART kh_6 423 498 IPR004087 GO:0003676
Lele13g0605 684 SMART kh_6 51 163 IPR004087 GO:0003676
Lele13g0605 684 SMART kh_6 173 247 IPR004087 GO:0003676
Lele13g0605 684 Pfam KH domain 336 387 IPR004088 GO:0003723
Lele13g0605 684 Pfam KH domain 56 104 IPR004088 GO:0003723
Lele13g0605 684 Pfam KH domain 177 241 IPR004088 GO:0003723
Lele13g0605 684 Pfam KH domain 613 676 IPR004088 GO:0003723
Lele13g0605 684 Pfam KH domain 427 490 IPR004088 GO:0003723
Lele13g0605 684 ProSiteProfiles Type-1 KH domain profile. 611 675 - -
Lele13g0605 684 ProSiteProfiles Type-1 KH domain profile. 174 242 - -
Lele13g0605 684 CDD PCBP_like_KH 55 105 - -
Lele13g0605 684 CDD PCBP_like_KH 426 491 - -
Lele13g0605 684 Gene3D K Homology domain, type 1 53 110 IPR036612 GO:0003723
Lele13g0605 684 MobiDBLite consensus disorder prediction 114 139 - -
Lele13g0605 684 ProSiteProfiles Type-1 KH domain profile. 333 403 - -
Lele13g0605 684 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 611 679 IPR036612 GO:0003723
Lele13g0605 684 ProSiteProfiles Type-1 KH domain profile. 424 497 - -
Lele13g0605 684 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 329 675 - -
Lele13g0605 684 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 420 497 IPR036612 GO:0003723
Lele13g0605 684 Gene3D K Homology domain, type 1 607 681 IPR036612 GO:0003723
Lele13g0605 684 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 43 105 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0605 Lele-ChrLele13 18220582 18225758 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0603 13 18211324 18213658 Lele13g0605 13 18220582 18225758 CCT
Lele15g1880 15 11568083 11570541 Lele13g0605 13 18220582 18225758 CCT
Lele13g0605 13 18220582 18225758 Lele15g1878 15 11556049 11562012 hybridization
Lele13g0605 13 18220582 18225758 Lele16g1909 16 11510398 11516930 hybridization