Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0597 ATGACTGAGGTCGAAGCTTCTCGCTCCGACAAGAAGAAGAAGAAGCATCGTAACGAAGACGAAGCTGCCGACGTCCAAGATTCCGACTACCTGATCAAACCCCAGAGCTACACTCCCACCATTGACACTTCTCAATGGCCAATTCTCCTCAAGAACTACGACCGCCTCAATGTACGAACCGGACACTACACTCCTATTCCCTCAGGTTTCTCTCCTCTCAAGCGACCTCTTCCCGAGTACATCAAGTACGGTATCATGAATCTCGATAAACCCGCGAACCCCTCCTCCCACGAGGTCGTCGCTTGGATTAAACGGATCCTCCGGGTCGAGAAAACTGGTCACAGTGGTACTCTTGATCCTAAGGTCACTGGCAACCTCATAGTTTGCATAGATAGAGCCACGCGTTTGGTGAAGTCGCAGCAGGGTGCTGGTAAAGAGTACGTTTGTATTGCTCGATTGCACTCTGCAGTGCCTGATGTCGCGAAAGTGGCGCGCGCGCTTGAGACGCTTACCGGAGCTGTGTTTCAGAGGCCACCGTTGATTTCTGCGGTGAAGAGGCAGCTTAGGATCAGGACAATATATGAAAGTAAGCTTCTTGAGTATGACCCTGATAAGCATTTGGTTGTGTTTTGGATTTCCTGTGAGGCGGGTACGTATGTGAGGACTCTCTGTGTCCATTTGGGTTTGATTCTGGGTGTGGGAGGCCATATGCAGGAGCTTAGAAGGGTGCGTTCAGGTATTGTAGGTGAGAAAGATAATATGGTTTCTATGCATGATGTGTTGGATGCTCAATGGGTTTATGATAATTATAGAGATGAGAGTTATTTGAGAAGGGTTATTATGCCTTTGGAAGTATTGTTAACGAGTTATAAGAGATTAGTTGTTAAGGATTCTGCTGTTAATGCTATTTGTTATGGAGCGAAGCTGATGATTCCTGGGTTACTGAGGTTTGAGAATGATATTGAGGTAGGGGAGGAAGTGGTTCTAATGACTACCAAAGGTGAAGCGATTGCATTGGGAATTGCAGAGATGACTACTGCTGTAATGGCTACTTGTGATCATGGTGTGGTATCAAAGATCAAAAGAGTGGTTATGGATAGGGATACGTATCCCAGGAAATGGGGTTTAGGACCAAGAGCATCCATGAAAAAGAAGTTGATTGCACAAGGTAAGCTAGATAAGCGTGGGAAGCCTAATGAGAATACTCCTCAAGAGTGGCTGAGGAATGTAGTTTTACCGACTGGTGGGGATTCTATTGTTGCCGGTATGCATGCCTCATCTGAACCAGATGCCGTCAAGGAGACTGCTTTAGTTGAGAGTAAGGAGGATGGGAAAGAGCGGAAAAGAAAACTAGTTGAAAGCACTGATCCTGCTGCAGTGCCCACTAAGAAGGCCAAAACTAAAGAAGTTGAAGAAGCTGAAACGGAAGAAGTAGTGAAGATCAAGAAGGTAAAAGAGGATGTAGTGGAGATTGAAGTTGATAAGAAAGAGAAAAAGAAGAAGAAGAAGAAGAAGAAGGATAAGGATGCGGATGAAGCGGAGGCTGGTTCACCAGATGCGGAGAAGTCTGAGAAGAAGAAAAAGAAACACAAAGAAAAGACAGAAGCTGAAGCTGCTTCACCTAACGTGGAGAAGTCGGAGAAGAAGAAAAAGAAGGAGAAAGAGGCGGAAAATAATGCTGCTGAGTTCAATGGGAAGGCTAATGATGATGAAGAGAAAAGTGTGAAAAAGAAGAAGAAACATAAGAAGAAAAGTGAAGATGCAGAGGAGGACTAA 1776 0.4521 MTEVEASRSDKKKKKHRNEDEAADVQDSDYLIKPQSYTPTIDTSQWPILLKNYDRLNVRTGHYTPIPSGFSPLKRPLPEYIKYGIMNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGIVGEKDNMVSMHDVLDAQWVYDNYRDESYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVSKIKRVVMDRDTYPRKWGLGPRASMKKKLIAQGKLDKRGKPNENTPQEWLRNVVLPTGGDSIVAGMHASSEPDAVKETALVESKEDGKERKRKLVESTDPAAVPTKKAKTKEVEEAETEEVVKIKKVKEDVVEIEVDKKEKKKKKKKKKDKDADEAEAGSPDAEKSEKKKKKHKEKTEAEAASPNVEKSEKKKKKEKEAENNAAEFNGKANDDEEKSVKKKKKHKKKSEDAEED 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0597 591 MobiDBLite consensus disorder prediction 506 576 - -
Lele13g0597 591 ProSiteProfiles PUA domain profile. 290 365 - -
Lele13g0597 591 SUPERFAMILY Pseudouridine synthase 43 288 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele13g0597 591 FunFam H/ACA ribonucleoprotein complex subunit CBF5 76 282 - -
Lele13g0597 591 Pfam TruB family pseudouridylate synthase (N terminal domain) 104 220 IPR002501 GO:0006396
Lele13g0597 591 TIGRFAM unchar_dom_2: uncharacterized domain 2 286 361 IPR004521 GO:0003723
Lele13g0597 591 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 7 533 IPR004802 GO:0006396
Lele13g0597 591 TIGRFAM CBF5: putative rRNA pseudouridine synthase 50 375 IPR004802 GO:0006396
Lele13g0597 591 MobiDBLite consensus disorder prediction 1 27 - -
Lele13g0597 591 Gene3D PUA domain 43 374 IPR036974 GO:0003723
Lele13g0597 591 SMART DKCLD_2 42 100 IPR012960 -
Lele13g0597 591 MobiDBLite consensus disorder prediction 1 29 - -
Lele13g0597 591 Pfam tRNA pseudouridylate synthase B C-terminal domain 221 287 IPR032819 -
Lele13g0597 591 Coils Coil 546 573 - -
Lele13g0597 591 MobiDBLite consensus disorder prediction 437 454 - -
Lele13g0597 591 Pfam DKCLD (NUC011) domain 43 100 IPR012960 -
Lele13g0597 591 Pfam PUA domain 291 363 IPR002478 GO:0003723
Lele13g0597 591 CDD PseudoU_synth_hDyskerin 82 264 - -
Lele13g0597 591 SMART pua_5 291 365 IPR002478 GO:0003723
Lele13g0597 591 Coils Coil 481 508 - -
Lele13g0597 591 MobiDBLite consensus disorder prediction 437 591 - -
Lele13g0597 591 MobiDBLite consensus disorder prediction 462 497 - -
Lele13g0597 591 Gene3D Pseudouridine synthase 76 282 - -
Lele13g0597 591 SUPERFAMILY PUA domain-like 290 371 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0597 Lele-ChrLele13 18154731 18156506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0597 1 560 NAC Transcription Factor Family AT3G57150 73.619 0.0 730
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0597 13 18154731 18156506 Lele15g2152 15 14437195 14441909 hybridization
Lele13g0597 13 18154731 18156506 Lele16g2181 16 17196739 17203342 hybridization