Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0590 ATGATTTCCGAGAGAGAAACGGCTGATGCCATATGGGATTGGGTTGATATCCTTCAAATGATCAATTGCACGAAGAGCTTTTTCGACTTGTCAACAAGCATTGGTTTTCCTGTTGACAATGATGATAATGATGAGTTTGACAACCCCACAGAAGGTTTTGCTTCCATCCCTGAGGCTATTGAGGATATTCACCAGGGAAAGATGGTATTGGTTGTAGATGATGAGGACAGGGAAAATGAAGGAGACTTGATAATGGCTGCACAGTTGGCAACACCTGAGGCTATGGCTTTTATTGTGAAGCATGGAACTGGGATAGTTTGTGTAAGCATGAAAGAGGAAGATCTGGAGAGATTGGAACTTCCTTTGATGGTAGACAGTAAGGATAATGATGAGAAACTTCGTACTGCATTTACTGTGACAGTGGATGCCAAACGAGGTACCACCACAGGGGTATCAGCAACTGATAGGGCAACAACAGTCTTGGCTCTTTCATCAAGAGATTCAAAACCATCTGATTTTAATCGCCCAGGCCATATATTTCCATTAAAATACCGGGAAGGTGGTGTTTTGAAGAGAGCTGGACATACAGAAGCTTCAGTTGATCTTGCTATACTTGCAGGTTTGGAACCTGTGGCAGTTCTATGTGAAGTTGTAGATGATGATGGTTCCATGGCTAGATTGCCAAAGCTTCGCCAATTTGTAGAGCGTGAAAACTTGAAAATAATTTCTATTGCTGACTTAATAAGATATAGAAGGAAGAGAGATAAATTAGTAGTTCTTGCTGGTGCTGCACAAATACCTACGATGTGGGGGCCATTCACATCTCATTGTTACAGATCACTTTTAGATGGGATGGAACATATTGCAATGGTTAAGGGTGACATAGGGGATGGAAAAGATGTTCTCGTGAGGGTTCACTCCGAGTGTCTAACTGGAGATATATTTGGATCTGCCAGATGTGACTGTGGGACTCAGCTTGGGCTTGCGATGCAGCAAATTGAGGCTGCTGGTAGGGGTGTCCTGATATATCTCCGAGGACACGAAGGAAGAGGTATCGGGCTTGGCCACAAGCTTCGTGCGTATAACTTGCAAGATGATGGACGAGATACTGTAGAAGCCAATGAAGAGTTGGGTTTGCCTGTTGACTCGAGGGAATATGGAATTGGTGCACAGATGTTGAGGGACTTGGGTGTTCGATCGATGAATTTGATGACGAACAATCCGGCGAAATATGTTGGGCTGAAAGGTTATGGTTTGACAATTTCTGGTAGGATTCCATTAGTAACCCTGATCACAAAGGAAAACCGGAGGTATCTGGAGACAAAACGTGCCAAAATGGGACACGTTTATGGTTTGGATTTCAACAACCAGTTGAGTAGTTATGCTACTGGCAACGGTAAAGTCAATGCTGATGATTCTAATAATGCTGTTCCTGGCTCATGA 1443 0.4338 MISERETADAIWDWVDILQMINCTKSFFDLSTSIGFPVDNDDNDEFDNPTEGFASIPEAIEDIHQGKMVLVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKEEDLERLELPLMVDSKDNDEKLRTAFTVTVDAKRGTTTGVSATDRATTVLALSSRDSKPSDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAILAGLEPVAVLCEVVDDDGSMARLPKLRQFVERENLKIISIADLIRYRRKRDKLVVLAGAAQIPTMWGPFTSHCYRSLLDGMEHIAMVKGDIGDGKDVLVRVHSECLTGDIFGSARCDCGTQLGLAMQQIEAAGRGVLIYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRSMNLMTNNPAKYVGLKGYGLTISGRIPLVTLITKENRRYLETKRAKMGHVYGLDFNNQLSSYATGNGKVNADDSNNAVPGS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0590 480 FunFam Riboflavin biosynthesis protein RibBA 258 429 - -
Lele13g0590 480 PIRSF RibA 51 460 - -
Lele13g0590 480 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 52 448 IPR016299 GO:0009231
Lele13g0590 480 SUPERFAMILY RibA-like 257 427 IPR036144 -
Lele13g0590 480 SUPERFAMILY YrdC/RibB 52 254 IPR017945 -
Lele13g0590 480 CDD GTP_cyclohydro2 257 448 IPR000926 GO:0003935|GO:0009231
Lele13g0590 480 Pfam GTP cyclohydrolase II 263 426 IPR032677 -
Lele13g0590 480 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 51 255 IPR000422 GO:0008686|GO:0009231
Lele13g0590 480 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 58 250 IPR000422 GO:0008686|GO:0009231
Lele13g0590 480 PANTHER GTP CYCLOHYDROLASE II-RELATED 51 451 - -
Lele13g0590 480 Gene3D DHBP synthase 43 258 - -
Lele13g0590 480 TIGRFAM ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 54 251 IPR000422 GO:0008686|GO:0009231
Lele13g0590 480 Hamap GTP cyclohydrolase-2 [ribA]. 256 452 IPR000926 GO:0003935|GO:0009231
Lele13g0590 480 Gene3D GTP cyclohydrolase II 259 429 IPR036144 -
Lele13g0590 480 FunFam Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 44 257 - -
Lele13g0590 480 TIGRFAM ribA: GTP cyclohydrolase II 264 449 IPR000926 GO:0003935|GO:0009231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0590 Lele-ChrLele13 18118953 18124281 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0600 13 18198190 18200563 Lele13g0590 13 18118953 18124281 CCT
Lele13g0590 13 18118953 18124281 Lele13g0590 13 18118953 18124281 ECH
Lele13g0590 13 18118953 18124281 Lele15g1893 15 11653150 11658617 hybridization
Lele13g0590 13 18118953 18124281 Lele16g1925 16 11614008 11618962 hybridization