Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0588 ATGATGACCCTCACCTTTCCCACTTCATCTTCACCGAATCCGCTACTTATTTACAAATATTCGACCAGGCTTCTGTTTAGGCTCATAAAATCATATTGGGAGATTCGGGAGCAGAAGAGAAATGGGTTGATAAAAAGACGGTTCATGTCAGCATCAATACAAGCGGCTCTCTACTTGAATGCCAGGTCAGGAGCCATAAAGGGGTCTAAGCCATGGGAAGGAACAAAATTCCAGTATGTAGACAATACTATAGTATGCCATGATTATCAAGAGATTAAAATCCAAGAAAGCACACAGGTTCTTGGTGCTGGTGTGATTCCTCGTTCAATTTTTGTCATCTTGAAGGATGACCTTGTTGACATTGTTAAAGCTGGAGATGATGTAATTGTTACTGGGGTGTTAACAGCAAAATGGTCATCAGAAGTCAAAGATGTGCGCTGTGACCTTGATCCTGTACTAATAGCCAACCATGTAAGGAGAACGAATGAACTGAAGTCAGAAATTGATATTCCTGATGATCTCGTTAAGAAGTTTAAGCAGTTCTGGATCCATTTTAAGGATTGTACTTTGAAAGGTGGGAGGAATGCAATTTTACGAGGAATTTGCCACAAGTATTTGAACTCTTCACGGTCAAGCTGGCAGGTAATGTATGAAAATGCAAGGCACAGGGAAATCTCAGTTTTTGAAATTTGCAGCAAAATTGAGCAATTGATCTGTAGTTACCACTGGCATGGGAAGCACCAGTGCTGGATTGACAGAGAATGGATGTTGGAAGCTGGCGCCCTTGTTCTGGCAGATGGTGGGCTGTGTTGCATAGATGAATTTGATAGTACGAGAGAACATGAAAGAGCAACCATACATGAAGCCATGGAGCAGCAGACCATGAGTGTTGCCAAGGCTGGTCTTGTAACAACACTCAGCACTAGAACGACAGTGTTTTGTGCTACCACTCTATCTGTCAACACAACACTCTCTTGTCCCTTATTAAGCAGGTTTGATATAGTCCTTGTGCTCTTGCATACAAAGAATCCTGAATGGGGTGCGGTAGTTTCAACTCATATCCTTAACGAGGCAGAATCAGATAAAACGAGGCAAGATGAAGAAGATCTAGCAAATATCTGGCCTCTTTCTACGCTCAGGAGAAAACCTACTGGTACATTCACTACATTAAAAAAGCCTTCAAGCCAGTCCTTACAAGAGACGCTGAGACAGTCATCCCCAGTTACTATCAACTGCAAAGGAAATGTGGAACTCATAATGCAGGACAACTGTTCGCATGCTGGAAAGCTTGGTTCGCCTAGCTCAAGCCCATGCAAGGCCCTGTTCAGAAATGAGGTGACTCGATTAGAGGCCATCACAGCCATTTTATGCATAGAATCTTCAATGACTACCTCTGCTATAGTGGATTGCATTGGTAATGCTCTGCATTCCAATTTTACTGAAAATCCCGACGAGGAATTTTTCACTCCAAAACAAGACTATTTACAGTGGGTACCTCCGCCGCTTTAG 1509 0.4268 MMTLTFPTSSSPNPLLIYKYSTRLLFRLIKSYWEIREQKRNGLIKRRFMSASIQAALYLNARSGAIKGSKPWEGTKFQYVDNTIVCHDYQEIKIQESTQVLGAGVIPRSIFVILKDDLVDIVKAGDDVIVTGVLTAKWSSEVKDVRCDLDPVLIANHVRRTNELKSEIDIPDDLVKKFKQFWIHFKDCTLKGGRNAILRGICHKYLNSSRSSWQVMYENARHREISVFEICSKIEQLICSYHWHGKHQCWIDREWMLEAGALVLADGGLCCIDEFDSTREHERATIHEAMEQQTMSVAKAGLVTTLSTRTTVFCATTLSVNTTLSCPLLSRFDIVLVLLHTKNPEWGAVVSTHILNEAESDKTRQDEEDLANIWPLSTLRRKPTGTFTTLKKPSSQSLQETLRQSSPVTINCKGNVELIMQDNCSHAGKLGSPSSSPCKALFRNEVTRLEAITAILCIESSMTTSAIVDCIGNALHSNFTENPDEEFFTPKQDYLQWVPPPL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0588 502 Pfam MCM OB domain 76 135 IPR033762 -
Lele13g0588 502 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 79 202 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lele13g0588 502 Pfam MCM P-loop domain 252 356 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele13g0588 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 250 356 IPR027417 -
Lele13g0588 502 Gene3D - 200 467 IPR027417 -
Lele13g0588 502 ProSiteProfiles MCM family domain profile. 253 354 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele13g0588 502 SUPERFAMILY Nucleic acid-binding proteins 73 143 IPR012340 -
Lele13g0588 502 PRINTS Mini-chromosome maintenance (MCM) protein family signature 260 274 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele13g0588 502 PRINTS Mini-chromosome maintenance (MCM) protein family signature 288 301 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele13g0588 502 Gene3D - 25 163 IPR012340 -
Lele13g0588 502 SMART mcm 28 436 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0588 Lele-ChrLele13 18100840 18108595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0588 69 486 Core DNA Replication Machinery Family AT2G14050 54.565 5.29e-153 449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0588 13 18100840 18108595 Lele15g1894 15 11669664 11677866 hybridization
Lele13g0588 13 18100840 18108595 Lele16g1927 16 11631090 11638634 hybridization