Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0583 ATGTTGGCTCCCGTTTTGGCCAAACGGAAATTTGTTGTGCAAACGGGAGAAGGGGACAAAACAAATAGCCAGGGGGAGGTCAGAATCAGGAAACACTCGCCGCTTCTGAGGCAGGCGCCGGTGGTTCTCTGTGACGGAGGAGACATGGAAAATGACGACGTCGACATGCAAAGCGCAGACAACAATGAAGCAGAATTGGATGACATGAAGAAACGTTTGAAGGAGATGGAAGATGAAGCTGCTGCTCTGAGAGAAATGCAGGCCAAGGTGGAGAAGGAGATGGGCTCCGTGCAAGATCCCACTAATGCTGCTGCAAGTCAGGCCAATAGAGAGGAAATAGATTCTCGGTCAATCTTTGTAGGCAATGTAGACTATTCATGTACTCCTGAAGAAGTGCAGCAGCATTTCCAATCGTGTGGAACAGTAAACAGAGTCACCATTCGTACTGACAAGTTTGGGCAACCCAAGGGTTATGCTTATGTGGAGTTCCTTGAGGCAGAGGCTGTTCAGGAGGCACTTCTGCTGAATGAAACTGAACTACATGGGCGTCAGTTGAAGGTAACAGCCAAGAGGACCAACATACCCGGGATGAAGCAGTATCGTCCCCGCCGGCCCAATCCTTACATGGGGTTTCGAGGCAGAACCCCACATGCACCTCCTTTTGCCTATTCTCCATATGGATATGGGAAGGTTCCAAGGTTCAGAATGCCAATGCGTTATAGCCCATACTATTGA 735 0.4939 MLAPVLAKRKFVVQTGEGDKTNSQGEVRIRKHSPLLRQAPVVLCDGGDMENDDVDMQSADNNEAELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPTNAAASQANREEIDSRSIFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEAEAVQEALLLNETELHGRQLKVTAKRTNIPGMKQYRPRRPNPYMGFRGRTPHAPPFAYSPYGYGKVPRFRMPMRYSPYY 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0583 244 CDD RRM_II_PABPs 117 188 - -
Lele13g0583 244 Coils Coil 56 93 - -
Lele13g0583 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 186 IPR000504 GO:0003723
Lele13g0583 244 Gene3D - 44 197 IPR012677 -
Lele13g0583 244 SMART rrm1_1 117 188 IPR000504 GO:0003723
Lele13g0583 244 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 54 202 - -
Lele13g0583 244 SUPERFAMILY RNA-binding domain, RBD 107 214 IPR035979 GO:0003676
Lele13g0583 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 192 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0583 Lele-ChrLele13 18053617 18058717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g0583 117 187 Eukaryotic Initiation Factors Gene Family AT2G36660 33.333 8.09e-08 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0583 13 18053617 18058717 Lele13g0572 13 17899724 17901788 CCT
Lele13g0583 13 18053617 18058717 Lele14g0475 14 16369780 16378502 CCT
Lele13g0583 13 18053617 18058717 Lele15g1913 15 11875892 11878254 CCT
Lele13g0583 13 18053617 18058717 Lele16g1940 16 11772540 11777349 CCT
Lele13g0583 13 18053617 18058717 Lele15g1901 15 11725094 11730390 hybridization
Lele13g0583 13 18053617 18058717 Lele16g1930 16 11667217 11671487 hybridization