LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele13g0573	ATGGCCACAGTCGCCACCACCACTCCACCGTCAGCTCCGCCGCCACAATCCCTAAAATTGGAGTCCCTTGCTCGCATAGACACCACCACTCTGTCCCAGTCCGAGCTTCAAGCGCTCTCTCTCTGCTCTCTCTCCGCCTTCGACCTCCGCTCTACCACCAACCTCGTTTTCCCCCATGTCGACCGTTCACTCTTCAATGAGAGCGCTGGCTCTCGCCGCCAGACCTACTCTCGACCACGCAAACCCCTTTCCCCTTCTGACTCCCCCACAGGCCACCGCCGCCGCGTCGCCGGTCTTCTTCCAACTCCAAAGCCCCCACCTGTCCCCGATGACGACCCGGAAAACTTAGAGAACCGCAAGATTATAGACTATTTGAAGCAATTGATTAGGGAAGACCCTAAATTCGATCAAGTCGAGCTAATCCCACCTTCTGTTACCCATGAAGTTGTGCCGGATTTGGAATTAGGGGGCGGGATGATGGAGAGCGAGGATATGGGGCTGGTGCGGAAGAGGAAGAGGGGGAGGAAGCCCAAAGTGAAGGTGCATTTGAAGGAGTGCTATAGAGAGATGGAGTTTGTGAATAAGGGTGGTGTTCCTATTGATCTTTCTGCTTTGGCGAATACGGACGATCCATTTGCTGAGGAGTTGAGGAAAAGTACTGAGGGGTTGCAGAGTGAAGAACAGCTATTGGGGTTTTTGAGGGATTTGGGAGGACAATGGGGAAGTAGGAGGAAGAAGAGGAAGATTGTGGATGCCGGAGATTTCGGCGATGTACTGCCGGTTGGTTGGAAGCTTCTACTGGGTTTGAAGAGAAAAGATGGACGCGCGTGGATTTATTGCCGCAGATATATCAGTCCTAGTGGAGAACAATTTGTATCTTGCAAAGAAGTTTCTTCATATCTTCAGTCTCTCTTTGGTCACAATGATGCCCAGTTACCAATCAATCGTGGTGGTGAAAATATGCTGATGGACAATAGGGTGACTACTCAAAGTTTTGCAGGTGTTACCCTTGAGGAGCAGGATAAAAGGATGATCATTGCAAATGACTCAGCTCCACCCAGTTCTTCTGAACGTAATGAACGATTGAAGGATGTGACCTTATTGGGAATTGAGAATCTTGCAGATGTGCAAATACATGACCTATTTGAATGTCACAAGTGTAGCATGACATTTGATGAGAAGGATTCTTACTTGCAGCACCTTTTGTGTTTCCACCAAAGGACAACAAGGCGCTATCGACTTGGTTCTTCTGTTGGAGATGGAGTTATAATCAAAGATGGAAAATTTGAGTGCCAGTTCTGCCATAAGGTGTTTCTTGAAAGGCGTCGCTACAATGGACATGTGGGGATCCATGTTAGGAACTATGTGAGGAAAGTTGAAGAATCACCAGGTCAGGTAAATGTTCAAAGGAGAGATAAGTCTCCAATCAAGGAGGATTTGCCTTCAAGGATCTCTAAGATGGATGCGCTAATTGAAATTGCTCAGAACTCTATTATGGAGAATTTTGCAATTGAAACCCTTGGTAATCAGGCTTCCTCTCCTGATAAATTGAATGTAATTTCTCCTACAGAAACTGCTGTTGGTAAGTTAGATCAGGACAAAATTTTTGAGTCTCCCCTCCGTGAACAGCATATGGAAGATAGAGTCAGTTACAAAAATGTGGATCACGATTTGAATCATCAAGGTAGTAAACTTGCGGTCATGGATGAAGAAGTAGAGCGAACTGATGGTAGCAACAAAGTTATAGATGCTAAGATAGAGATCTGCAAGGATTCCATTGGTTTGTCAACTGTAAACGAGCAAAATGTTGATTCATTTGAGAAGTCAAAGATAAAAAATTATGCGGGATTGACTTTTGATGGTTTGGATCAGCCCAGTGTTGATTTGGAAGGAGTTTCACAAAGCTCGTTACTTCCTTCATCTGGCAGTGATACAACCCCTGAAGTTGAAAATAATCAAAATTCTGGTGGCTCTATTACTGTGGAGCAACTTAACCATGATGAAGATATTAGAATTATGAATGAATTCAAAGTTGAATTAGATGGCATAAAAGATGTATCTGTTACGTCTAAAATCAAAGAGACAACATTGCCAACTTCTGAAGACAAAACAGTGTCATCTGAAATTCCAACCCCGTCTGTGTCCAAGAAAAACCTTGAGAATATTGCTGCGGTTATGGGGGAAAACCAATATGGCAGTGTTGAACTCAAACATGATGACATGAGTGGGTCACAGGAATTGAGGTTTGATGAAACAGAAACTTCGGAGTGTGATTTTGCAGATGGTCATCCTTCTCTTTCTCTGCCACACGTGCCAACAGTTTTGGCAAACAACACACAGATGGAAGAAGGGGCTTGTGCTTCCTCAGTTCAGGCTGAATCTCAAGAAGCAGGAAGACATCAGATTAGAACATCGTGTGTATGGTGTGGTATGGTGTTTGATTATGATGCTGTTGATTCTGAAATACAACCAGATTCTGTTGGATTCATGTGCGCTGCTTGTAAGGCCAAAATATCTGGTCAAATCGATGTGTTGGACAGTGGAGATCACCCTTGA	2556	0.4464	MATVATTTPPSAPPPQSLKLESLARIDTTTLSQSELQALSLCSLSAFDLRSTTNLVFPHVDRSLFNESAGSRRQTYSRPRKPLSPSDSPTGHRRRVAGLLPTPKPPPVPDDDPENLENRKIIDYLKQLIREDPKFDQVELIPPSVTHEVVPDLELGGGMMESEDMGLVRKRKRGRKPKVKVHLKECYREMEFVNKGGVPIDLSALANTDDPFAEELRKSTEGLQSEEQLLGFLRDLGGQWGSRRKKRKIVDAGDFGDVLPVGWKLLLGLKRKDGRAWIYCRRYISPSGEQFVSCKEVSSYLQSLFGHNDAQLPINRGGENMLMDNRVTTQSFAGVTLEEQDKRMIIANDSAPPSSSERNERLKDVTLLGIENLADVQIHDLFECHKCSMTFDEKDSYLQHLLCFHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRKVEESPGQVNVQRRDKSPIKEDLPSRISKMDALIEIAQNSIMENFAIETLGNQASSPDKLNVISPTETAVGKLDQDKIFESPLREQHMEDRVSYKNVDHDLNHQGSKLAVMDEEVERTDGSNKVIDAKIEICKDSIGLSTVNEQNVDSFEKSKIKNYAGLTFDGLDQPSVDLEGVSQSSLLPSSGSDTTPEVENNQNSGGSITVEQLNHDEDIRIMNEFKVELDGIKDVSVTSKIKETTLPTSEDKTVSSEIPTPSVSKKNLENIAAVMGENQYGSVELKHDDMSGSQELRFDETETSECDFADGHPSLSLPHVPTVLANNTQMEEGACASSVQAESQEAGRHQIRTSCVWCGMVFDYDAVDSEIQPDSVGFMCAACKAKISGQIDVLDSGDHP	851

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele13g0573	851	ProSitePatterns	Zinc finger C2H2 type domain signature.	431	451	IPR013087	-
	Lele13g0573	851	ProSiteProfiles	Zinc finger C2H2 type domain profile.	429	456	IPR013087	-
	Lele13g0573	851	ProSitePatterns	Zinc finger C2H2 type domain signature.	384	405	IPR013087	-
	Lele13g0573	851	SUPERFAMILY	DNA-binding domain	257	304	IPR016177	GO:0003677
	Lele13g0573	851	SMART	c2h2final6	429	451	IPR013087	-
	Lele13g0573	851	SMART	c2h2final6	382	405	IPR013087	-
	Lele13g0573	851	PANTHER	METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8	1	607	IPR037472	-
	Lele13g0573	851	MobiDBLite	consensus disorder prediction	632	659	-	-
	Lele13g0573	851	Gene3D	Classic Zinc Finger	358	457	-	-
	Lele13g0573	851	MobiDBLite	consensus disorder prediction	68	117	-	-
	Lele13g0573	851	ProSiteProfiles	Methyl-CpG-binding domain (MBD) profile.	249	321	IPR001739	GO:0003677
	Lele13g0573	851	MobiDBLite	consensus disorder prediction	68	84	-	-
	Lele13g0573	851	ProSiteProfiles	Zinc finger C2H2 type domain profile.	382	410	IPR013087	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele13g0573	Lele-ChrLele13	17904008	17908169	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Lele13g0573		None	None	None